YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30261963, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMATGCVLGS LLITAACSGK KTSTEDEKTI KVGVLASLTG PLESYGKQTM NGFELGLDYA  60
   61 TGGTGKVEGK KIKFVVEDTE TKADVAVKKA TKLLEEEKVD FLVGSSSSSD TLAVLPLAEE 120
  121 YEKIMVVEPA VADSITGKNW NKYIFRTGRN SSQDAVAGAA AIAKKDVKIA TLAQDNAYGR 180
  181 EGISAFKAGA KKLGANIVNE QYADTNSTDF TANIQNIISS KPDYLFIVWA GANSPWKQLK 240
  241 DMNVEAQGIK ISTGAPDIPA LKTMDALVGM QGFSVYYHTL PKNKVNDWLV EEHKKRFNGA 300
  301 VPDLFTAGGM SAAISIVEAL KKTKGDTDVD TLIKRMEGME FDTPKGKMKF REKDHQAMQT 360
  361 LYSITLKKQD GVDYPVPVLE RELTMKETEP PVQSK

Type	Start	End	Confidence
Signal Peptide	1	19	0.97
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	395	0.99