YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30255416, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.57
Transmembrane Helix	9	28	0.92
Non-Cytoplasmic	29	46	0.54
Transmembrane Helix	47	72	0.83
Cytoplasmic	73	88	0.53
Transmembrane Helix	89	114	0.81
Non-Cytoplasmic	115	128	0.54
Transmembrane Helix	129	152	0.88
Cytoplasmic	153	161	0.48
Transmembrane Helix	162	182	0.91
Non-Cytoplasmic	183	211	0.54
Transmembrane Helix	212	232	0.86
Cytoplasmic	233	238	0.56
Transmembrane Helix	239	262	0.86
Non-Cytoplasmic	263	288	0.53
Transmembrane Helix	289	310	0.85
Cytoplasmic	311	341	0.68
Transmembrane Helix	342	364	0.89
Non-Cytoplasmic	365	380	0.65
Transmembrane Helix	381	401	0.91
Cytoplasmic	402	410	0.58
Transmembrane Helix	411	428	0.78
Non-Cytoplasmic	429	435	0.55
Transmembrane Helix	436	454	0.79
Cytoplasmic	455	464	0.79
Transmembrane Helix	465	487	0.63
Non-Cytoplasmic	488	507	0.59
Transmembrane Helix	508	528	0.87
Cytoplasmic	529	861	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSWKRFLQ IGKIIFPFVV LTIVFFQAKK ELAGISFLEA INTIKNIPTG GVFLAITLGA  60
   61 FAVSTMFFYD YVMLRYLKAD IPVQKIFRIS WIANTLNGFI GFGGLVGAGV RTMLYRPYIK 120
  121 ENGKLIKSIA WMTTAFINGL AILSFLGLIG ILDTSFILHE KPWLWPVLIF FALFVPIYIG 180
  181 FSKLKNRKTK QAEGQDEGEE EKNPTVLYSL VSLVEWVSAG IVMYVILILF GIDIEFQKFL 240
  241 GVYVIAALAG VVSLVPGGLG SFDLVFLTGL GQYGIDTGVL LPAMLLYRLV YYILPFCLGL 300
  301 IFAAFEMTGV AIKKFEDKPF IAPALETTGV IWTLQRDFLG KLGSWASAAL TVFAGLMVIL 360
  361 STILPTSINR AHALHILAPK HLIQFSFSLS LTFGILLLIL SRGIYYGTKR SYYMTIISLI 420
  421 GAAVFNTLKG IDIEETFILL IVLAVLYMLR KRFVREKMEV SLSDIVKVFI FLLITLYLYK 480
  481 NLGILFAGAK EAFKPDFVVR NITQVKRSAL AAAFFVPTFL LIGSLIANRY RNEFPGQPAN 540
  541 DKRLQNFLDE HGGNVLSHLG FLGDKQFFFS SDGKALLLFS ITGKRLVVLG DPIGDPSSYR 600
  601 TVLQEFLAEA DRFGYICVFY QIESKWMSLY HDFGYNFFKL GEEAVVDLNT FTITGKKRAG 660
  661 MRATFNRFER EGYTFSIHQP PFSNELFEEL RKVSDAWLGG KKEKSFSLGY FDHEYISRAP 720
  721 IATLSDADGK IIAFTTFMPV YQDGSLSVDL MRYYPDAPSG IMDAIFIHLF QWAKENEYHS 780
  781 FNIGMAPLSN VGLSTQSFWS ERVAAAIFNN VRYTYSFSGL RHFKEKYKPA WSGKYLAFRK 840
  841 NHSLPITMLS VTKLIGKRKN S