YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47501873, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRIGLAWQI LIGLALGIAV GAIFFDNPAV VKYLQPIGDI FIRLIKMIVV PIVVASIVVG  60
   61 VAGVGDVKKL GRLGGKTIIY FEIITTIAII VGLLIANIFQ PGKGVNMEQL TKTDISKYTH 120
  121 TTEQVQSHSF ADTFVNIVPT NIMKSLADGD MLAIIFFSVL FGLGVAAIGE RGRPVLQFFQ 180
  181 GVADAMFYVT NQVMKFAPFG VFALIGVTVS TFGLASLIPL GKLLIVVYGA MIFFVVVVLG 240
  241 LTAKIFGINI FQFFKILKDE LILAYSTASS ETVLPKIMEK MEKFGCPKAI TSFVIPTGYS 300
  301 FNLDGSTLYQ AIAAIFLAQM YGIDLSITEQ ITLLLVLMVT SKGIAGVPGV SFVVLLATLG 360
  361 TVGIPAEGLA FIAGIDRILD MARTAVNVVG NSLAAVVMSK WEGQYDAEKG QAYLKEISNK 420
  421 QAA

Type	Start	End	Confidence
Cytoplasmic	1	6	0.85
Transmembrane Helix	7	25	0.95
Non-Cytoplasmic	26	43	0.82
Transmembrane Helix	44	65	0.92
Cytoplasmic	66	77	0.84
Transmembrane Helix	78	99	0.94
Non-Cytoplasmic	100	150	0.92
Transmembrane Helix	151	169	0.94
Cytoplasmic	170	195	0.83
Transmembrane Helix	196	218	0.90
Non-Cytoplasmic	219	224	0.72
Transmembrane Helix	225	248	0.90
Cytoplasmic	249	306	0.75
Transmembrane Helix	307	340	0.50
Non-Cytoplasmic	341	343	0.38
Transmembrane Helix	344	373	0.72
Cytoplasmic	374	423	0.64