YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30261527, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.87
Transmembrane Helix	11	30	0.95
Non-Cytoplasmic	31	39	0.78
Transmembrane Helix	40	60	0.94
Cytoplasmic	61	93	0.90
Transmembrane Helix	94	116	0.91
Non-Cytoplasmic	117	140	0.91
Transmembrane Helix	141	160	0.91
Cytoplasmic	161	172	0.84
Transmembrane Helix	173	192	0.90
Non-Cytoplasmic	193	216	0.83
Transmembrane Helix	217	240	0.87
Cytoplasmic	241	252	0.90
Transmembrane Helix	253	275	0.92
Non-Cytoplasmic	276	301	0.86
Transmembrane Helix	302	323	0.88
Cytoplasmic	324	340	0.84
Transmembrane Helix	341	363	0.91
Non-Cytoplasmic	364	378	0.86
Transmembrane Helix	379	398	0.95
Cytoplasmic	399	424	0.90
Transmembrane Helix	425	446	0.91
Non-Cytoplasmic	447	451	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKETQQWTSK IGFVLAAAGA AVGLGAIWKF PYVAGNGGGG AFFLVFLLLT LFIGMPLLLA  60
   61 EFVIGRSTQK EAVTAYKVLV PNSKLYPWIG RMGVVTCFSV LSFYSVVGGW ILLYLYYSIT 120
  121 GSFWNGVVDY GKLFNETISN PLSAIGAQFI FMLCTIFVVS KGVEKGIEKA SKYMMPLLFI 180
  181 LFIAIIVRAL TLDGAFAGVE FFLKPDFSKL TADTVLYAMG QSFFSLTVGA SVMVTYSSYL 240
  241 KKEEHLAKSA TSIVSLTVFI TVLAGLAIFP AIFALGVKPT EGPGLLFIVL PAVFAKIPFG 300
  301 QFFFIMFLVL FFFATLTSAI SMLEIVVASV AKDNEKKRPS ASLLIGILIF AVGIPSALSF 360
  361 GIMSDVKIFG KTFFDFVDFV VSNVLLPLGV LAISLFVPNK MSKEMLMKEL EVTETKGKTL 420
  421 FNIWFFLLRY VIPVTVIIVF LNAIGVFKMF A