YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30254219, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.95
Transmembrane Helix	10	31	0.94
Non-Cytoplasmic	32	63	0.88
Transmembrane Helix	64	84	0.93
Cytoplasmic	85	93	0.83
Transmembrane Helix	94	114	0.93
Non-Cytoplasmic	115	119	0.71
Transmembrane Helix	120	141	0.90
Cytoplasmic	142	150	0.76
Transmembrane Helix	151	172	0.81
Non-Cytoplasmic	173	198	0.71
Transmembrane Helix	199	220	0.81
Cytoplasmic	221	238	0.59
Transmembrane Helix	239	253	0.87
Non-Cytoplasmic	254	254	0.16
Transmembrane Helix	255	274	0.62
Cytoplasmic	275	281	0.48
Transmembrane Helix	282	304	0.78
Non-Cytoplasmic	305	308	0.52
Transmembrane Helix	309	327	0.90
Cytoplasmic	328	334	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLKTNRAKW IGLFVGIIAV ITCIWGSIIF GYTNTSWKLA LDAFFHFNGS NEHIIIQNVR  60
   61 LPRALIAASV GASLAIAGCL MQTLTKNPLA SPDFIGLNSG AAFFIVVAIV IFSVTSLSAF 120
  121 TWIAFLGAAI AAVLVFASSS LGKEGTTPLK LTLAGVAISA LFSSLTQGLL VLNEKALEEV 180
  181 LFWLAGSVQG RKLEILQSVF PYLLIGWIAS IMMTGKVNTL MMGEDVAKGL GQRTILMKSF 240
  241 VLLIIVLLSG GSVAVAGPIG FIGIVTPHFA RFLVGVDHRW RVPYSGLLGA ILLILADIAA 300
  301 RYVIMPQEVP VGVMTAFIGA PFFIYIARKR GLSK