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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|85104851
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.81
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSAQRVQTD EDERRPLLDG RGRAEGFKST AAATAAAGEP AKTTWAGRNQ WIVLAMASGA  60
   61 CAAFNGAFAK LTTTELTSNF SQAIARLLHL SEEEKVIEVV VRGVFFGLNL LFNGVMWTLF 120
  121 TKALKCGLST TQVSIMNTSS NFVITAMLGF VIFSEALPPM WWVGAAMLVA GNVIIGRKDE 180
  181 GEGQGSSDTK QDGDGHSTGI GNGNNDAASV GGSAQGLAEG GLGTYRRAVQ AEGSGSRGRQ 240
  241 GDGIPAVDDA EKEDSDEDVA ELSGRAIGNG RRTFSEVWFQ GPHDEMKGSL ESLVPKLNIR 300
  301 KTRLRLNPAA IAEVARYAVE LWHEHRIPIL LSTVFLLGLL RTYLHLYSEP RQELLVLPKI 360
  361 YEPNEKTKET TLVETEVKDK KTGAAITKKA KTAKGGPKRI KGDKVRTKKG TNGNDTGSES 420
  421 EGPRKIQVLV FYSSLTGNTE RYTKDFAKEL GDLLVGQSDA ESKAESNFLA PQVLDLAEID 480
  481 FDDYFLSPMK GPVDYFYCFI IPSYNIDSIN DTFLAHLDET HNDFRIDTSP LASLIGYSVF 540
  541 GYGDRDGWPT EEEGYCVQAK QVDRWMAKLT GRKRAFPLGM GDYKRDGKER LSEWQNGIVD 600
  601 VLKMIEQTGS LGEGIPGSGD PFESDEEDIA EDDGEVVYEE SESKKTLEDV EDLGRIIKQT 660
  661 QGDGQAAPIA IDFTDFGKTG KTVHARKSAT VTVKEMVPKN SPTYTSLTKQ GYSIVGSHSG 720
  721 VKYSFYNIVS YCCMEATPSL SCSNKCVFCW RHGTNPVGTS WRWVVDPPDL IFNGIKENHY 780
  781 KKIKMMRGVP GVISSRFTEA LRIRHCALSL VGEPIFYPYI NELLGMLHKE RISSFLVCNA 840
  841 QHPDQLAALQ HVTQLYVSID ASNKDSLRRI DRPLHRDFWE RFQRCLDILR ERRFRQRTVF 900
  901 RLTLVKDFNI EDEIEGYADL VERALPCFIE LKGVTYCGTS TAGAAGLTMA NVPFYQEVCD 960
  961 FVVKLNDALN KRGLGYGIAA EHAHSCCVLL ASDRFKVDGK YHTHIDYEKF FDLLEEKGPD1020
 1021 GDFTPEDYMG AAVPEWATWG NGGFDPRDQR VDRKGRPIER P

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle