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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|85083522
Protein type: Transmembrane
Type Confidence: 0.82
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVKSAESRT GEVALIKAIR ALDGNSADTI GQRLETVWNT LSKHRGGSFH AAEEMLLRWL  60
   61 LKNMSGSAAI NHQVRRFPLS WNIMGAVFAW IPLFSLAKSL ADRRFIAVLQ QTLKDISTPQ 120
  121 SKKGDSDVEM KDATSDETAQ NSRKRKRTTA ATFHLNSQQQ VAGRLQTAEA VFEALRILLS 180
  181 RCDIKSTDGL PSNRMGAEHI KSLFSSSASD VMQILVPILS ICNLAAKSDE LESSKEQSTW 240
  241 MSTFYTLWDL HLQGPEDASA VAVSLSGLGA HLLSRLTATP RHPSLTIDTS VQEQWARDLR 300
  301 RFLTRNMILP ARAAFLNNRA QDVIQVATQM SSDFASTNYP VLFDLVTRAP RVLSEKATKK 360
  361 DYEEWIQAVF DGILAALKGA DASKSQPAVE AVLEMAADQQ LPLSAESLRS VCKAYGLQGD 420
  421 KLNWKLHLSI AKLNPDVFLV TQEGQVLLDQ ALAHTFCTRE KEAEKFDQAT EFLIHLVNGH 480
  481 ARARDLQGFI KTWLTYLDKN EPSGFPWTSS QLANVVAKTV EQSLTVGQLV DILSWVDGQK 540
  541 TKQKGVKLVI LAAIANGLSL EAYIDAANMR TLEIASKEKF DKKEKSVIST ARWTVAEKAI 600
  601 SRATVADAKS IWGSVHSDLK TTFKRSETYS PEAFAAFKCC AAAWVKLADD DEAASLTSSF 660
  661 VDKLDKKDDT KGTSKGDESS VSKSSYTTWI LEGCPHLVSL LTKRQSAFPP TLISALTPSE 720
  721 KDESRTLDSV QVLAQQVLEN QNIVGNEKVI GGLVDKTISL IETPKGPESL IVARGAIQLL 780
  781 LEVPMEALTR QQRESTMKRL ISQAKKVVDK PKHVDAQYWS LVLSLMTKLM SKPTFYEDMK 840
  841 FDDLETAGRC IRKIYKTSEE KGSTETILQE REDYRLLEAL ATSTIRQMCV AYPEEREKAY 900
  901 IANALTVLKS DSEEAYIAPR LVLLRAFISV ARENEKIKDE ADSLNLLATV KPIITSKKWR 960
  961 GKKLLPLLLA LEATDVLEPK DVKKKFSSAV NTLLKASNWL LEHGYQAGWE VRTFIAKHFR1020
 1021 EELGAPLQIV TGAQALADDS EEEGNDAEKL GSVAAAFEKL SVLEYVDVVV SSVYEDTKLG1080
 1081 YLKELFVGES ETSDASSRLL IVERLIQHIS GTRPPVRDDS SQGHFDLAHA HSLLCNRLSH1140
 1141 ATSSAAQFLQ IAKIVHLLLD KKANCMTQWN IDSTLSAVSA IACDVSSTTM LTTTPKTYES1200
 1201 LCHLVDIVIK RHRKRLDGHF HILIPALQSL LRRLISSASS TSTAPSLLSD STKERHAKLL1260
 1261 SRLLTLITEP TVASVSSRSN TSATTTKDTE HHNYQHQPLD SEKDKAKRYA GQHMYLVLMA1320
 1321 YVKLQLEFVV PLVVREQLET GMFSIVDITP AEGELRIMND GMDPSGRVIF KEMYKRWERF1380
 1381 GKWSGV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle