YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85108529
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQGPPQPGP GQMPMPPPGQ MPTPEQIQAI QRQLAIDAEK AGMTVPEFVE QLKRQHQQMM  60
   61 MRQMQMQQQQ QQQGGGGGPP PEDGHQHQHQ HQHQHQHGPP AGQARPIVPG PPKPEAIALA 120
  121 KFLRSQELKP RTVILNGERK DMFRVKRALR ALQSPAYEKA RKKNPLLPEI TDRASLENTF 180
  181 KLLPMSMLAL RVTKIDPHEG HDHAPTKKPH GGGKRVKGLW TVRIEPQQDA QDDMYYVWLW 240
  241 EGSQVMRKVY AALALLVIFA VVLYPLWPLK MRQGVYYLSW GFLMFLGLFF AMAIFRVILF 300
  301 CITYFVLSPG FWLFPNLWED VSVVESFKPV WAWHDPNPKK KKKNKSKTPA GSAKANATFA 360
  361 ATTGQPAPAT AVTTATDTQV ATATPTAAAQ RNYVAPKVEE LADDE

Type	Start	End	Confidence
Cytoplasmic	1	248	0.77
Transmembrane Helix	249	268	0.95
Non-Cytoplasmic	269	279	0.64
Transmembrane Helix	280	307	0.81
Cytoplasmic	308	405	0.73