YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|229836603, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.99
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	194	0.99
Transmembrane Helix	195	217	0.93
Cytoplasmic	218	235	0.83
Transmembrane Helix	236	260	0.88
Non-Cytoplasmic	261	269	0.85
Transmembrane Helix	270	292	0.93
Cytoplasmic	293	311	0.93
Transmembrane Helix	312	336	0.90
Non-Cytoplasmic	337	354	0.74
Transmembrane Helix	355	375	0.93
Cytoplasmic	376	386	0.81
Transmembrane Helix	387	404	0.93
Non-Cytoplasmic	405	412	0.69
Transmembrane Helix	413	431	0.93
Cytoplasmic	432	437	0.73
Transmembrane Helix	438	458	0.75
Non-Cytoplasmic	459	595	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQRFITLIL LLCSVLLAPH SAQSSLFGEN ASFGTKNSQS RFIPVDQAFA FDFHQQGDQL  60
   61 NLSWQIHPGY YLYRQQIKIV PQQAALGAFT LQEGITHHDE FYGEVEIFKQ QLTLKIPITQ 120
  121 AAEQASVSVT YQGCAEAGFC YPPETRVIPL DVVVAASTAS GTAAVNSSAT VNPPATTQPE 180
  181 GDATPVPSTL PFSPLWALLI GIGIAFTPCV LPMYPLISAV ILGREKPHSQ RRILILAVVY 240
  241 VQGMALTYTL LGLVVAAAGL QFQAALQHPY VLIGLSVLFV LLALSMFGLY SLQLPSSLQT 300
  301 RLTQWSNSQR GGSLAGVFAM GALAGLICSP CTTAPLSAIL LYIAQSGNML AGGGTLYLYA 360
  361 LGMGIPLVVV TLFGNKLIPR SGPWMQYVKE AFGFVILALP VFLLERVLGD VWGLRLWSLL 420
  421 AVAFFGWAFV LSLKAHAGWV RVCQLLLLAA LLIVARPLQD WAFNGNTQQN AVKHINFQPV 480
  481 ANLPQLQAVL AQAQGKPVML DLYADWCVAC KEFEKYTFSD DKVQRQLANT LLLQADVTAN 540
  541 NAEHATLLKK FNVLGLPTIL FFDSQGNEIT AARVTGFMDA AQFLQHLQNT PAVTK