YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85095443
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	152	0.95
Transmembrane Helix	153	172	0.91
Non-Cytoplasmic	173	183	0.70
Transmembrane Helix	184	214	0.81
Cytoplasmic	215	233	0.65
Transmembrane Helix	234	254	0.82
Non-Cytoplasmic	255	262	0.72
Transmembrane Helix	263	281	0.96
Cytoplasmic	282	290	0.77
Transmembrane Helix	291	313	0.91
Non-Cytoplasmic	314	333	0.86
Transmembrane Helix	334	357	0.84
Cytoplasmic	358	375	0.85
Transmembrane Helix	376	397	0.92
Non-Cytoplasmic	398	424	0.84
Transmembrane Helix	425	449	0.73
Cytoplasmic	450	476	0.85
Transmembrane Helix	477	494	0.96
Non-Cytoplasmic	495	504	0.77
Transmembrane Helix	505	526	0.93
Cytoplasmic	527	547	0.88
Transmembrane Helix	548	570	0.91
Non-Cytoplasmic	571	589	0.93
Transmembrane Helix	590	612	0.91
Cytoplasmic	613	659	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGFDQDIEL SAYSHSHGLG ISGNGRSGRQ RSIAEASSFT LGGASPSPRT KSFADVSPGG  60
   61 SHGRSKSIAA ASDGAGGGFH GTMSRFVDSF RRGDGTINKN LDLDDDNNTS SHGYSSHSIS 120
  121 RGHGGTRYYD LRPGTGKINT PSSLLARELK GRHLQMIAIG GSIGTGLFVA SGKTLSDGGP 180
  181 ASVLIAYLII GVMLFCTIQA LGELAVIFPV AGSFSAFSTR FLDPSWGFAM GWNYALQWIG 240
  241 VLPLEVLAGA MTIGYWNKEI NKAIFVTIFL VIIFVINLFG AKGYGEAEFI FAIIKVTAVV 300
  301 GFILLGIVIN IGGTPTEGYI GGKYWEDPGA FHNGFKGLCS VFVTAAFAFA GTELVGLAAA 360
  361 ETANPRKSLP TAIKQVFWRI SLFYIVSMTL VGLLVPYNEP RLLNAQNIAD ASASPFVIAI 420
  421 ESAGATVLPS VMNGVILISV ISVGNSAVYG SSRTLAALAE LGQAPAILAY VDRRGRPIVA 480
  481 ILVTMAVGLL AYLGDVPSQK NIFDWLLAIS GLSSILTWAS TCLAHIRLRK AWAYNHRSVQ 540
  541 DIAFKAQGGV IGSWIGFVLN VLVLVTQIWV SIDPLHQGDT PLTTKERVRS FFVSCLAIPV 600
  601 VLICTIVHKW YYKTKWVRIE DMDVDTGRRD FGRLGIIKAQ EKEERMGWPR WKRVYRFMC