YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42781837, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRGIIIVLL TVGVVGTGYW GYKEHQEKNA VLIRAENSYQ RAFHDLAYEV DLLHDKIGTT  60
   61 LAMNSRASLS PALADVWRLT SEARSDVGQL PLTLMPFNKT EEFLANIGDF SYRAAIRDLE 120
  121 KEPLNDQEYK TLQTLYSNAG NIQDELRKVQ HLVLKNNLRW MDVEMALASN RDPADNTIID 180
  181 GLKTVEKNVT SYSSTNFGPT FTSAQKNKKG GFEAGGKAIS KDEAAKIAKS FLNLKGNEKV 240
  241 EVEKSGKGAK ESFYSVKIKD EATNNEFYMD ITGKGGYPIW VMNNREIKEQ KISLNDAGSK 300
  301 GLKFLKDHKF HNMELYDSSQ YDNVGVFTYV VNENGVRIYP EAIQMKIALD DGSIVGFSAK 360
  361 EYLASHQKRT IPSAKLTAAE ARKKINPDVK VMEERKAMVV NDLHNEVLCY EFVGTLGKDT 420
  421 YQIFINANSG AEEKVKKMQA VEKIYD

Type	Start	End	Confidence
Signal Peptide	1	16	0.88
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	446	0.99