YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39985437, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFRKIASLL TVAAVASAFA VGFGCKKKEE APAGAPAAAG DTIKIGFLGA LTGDVAMFGK  60
   61 PTLDGMKMAA EELNAAGGVL GKKIEIVEAD NRGDKQEGAS VTQKLISRDG VVAIVGDPTT 120
  121 GITKVAAPIA QKAQVVLLSA GATGPGVVEN GDFIFRNTLL DSVAIPACID FFAKDLGYKK 180
  181 VAIITSDNND YSVGLSQTFR DAAKGKGVEI VADEKVKDGD KDFSAQITNI KGKKPDVIFF 240
  241 SGYYTEGALI MKEARKQGLK AKMFGGDGLF SPKLIELGGD AVEGTMSALG FSPEQASPVT 300
  301 AKFVEAYKKK FNGVEPGLFD AQGYDGVMML ADAMKRANSA DPKVFKTALG QTKNYEGVSG 360
  361 TITIRENREP IKSPLALLEV KGGKFALKAK VPVKMD

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	396	0.99