YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39998482, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGESLQSIVN LVDPYTLQIL VNIGIAIVLA LGLNVITGIT GQLSLGHAAF MSIGAFTSAV  60
   61 ITLRTGLPFS ANLLLSGLIT AFVGAAIGYP ILRLTGDYLA ICTLGFAEIV KVVFLNLDIT 120
  121 NKALGLSVPP ARSPIPMPII VWVVAILSII FVCFMKESRF GRALKAIRDD EIAAEAMGIN 180
  181 IARYKVQSFA VGSFLAGVGG CLYAHFLSYI NPSDFGFLKS VDILSMVVLG GLGSIAGTVF 240
  241 GASILAAAPE FLRFMSQYRM LVYGGLLVFL MVFRPNGLLG GINFTDLVLR AIGRKPATAE 300
  301 VNERHRK

Type	Start	End	Confidence
Cytoplasmic	1	14	0.70
Transmembrane Helix	15	38	0.85
Non-Cytoplasmic	39	42	0.56
Transmembrane Helix	43	63	0.86
Cytoplasmic	64	70	0.51
Transmembrane Helix	71	92	0.88
Non-Cytoplasmic	93	134	0.78
Transmembrane Helix	135	155	0.94
Cytoplasmic	156	185	0.96
Transmembrane Helix	186	207	0.92
Non-Cytoplasmic	208	222	0.91
Transmembrane Helix	223	247	0.87
Cytoplasmic	248	259	0.78
Transmembrane Helix	260	278	0.89
Non-Cytoplasmic	279	307	0.90