YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39984350, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	47	0.88
Transmembrane Helix	48	69	0.91
Non-Cytoplasmic	70	98	0.90
Transmembrane Helix	99	119	0.93
Cytoplasmic	120	144	0.92
Transmembrane Helix	145	163	0.83
Non-Cytoplasmic	164	192	0.45
Transmembrane Helix	193	217	0.85
Cytoplasmic	218	227	0.35
Transmembrane Helix	228	249	0.70
Non-Cytoplasmic	250	267	0.65
Transmembrane Helix	268	290	0.91
Cytoplasmic	291	303	0.63
Transmembrane Helix	304	324	0.88
Non-Cytoplasmic	325	339	0.61
Transmembrane Helix	340	363	0.79
Cytoplasmic	364	368	0.43
Transmembrane Helix	369	391	0.86
Non-Cytoplasmic	392	398	0.46
Transmembrane Helix	399	424	0.81
Cytoplasmic	425	614	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLEFPGKSA RWTTPLILIR DLHLLRRFVR MRRAVFSLLS RFRISENTLM AILAVGIGLL  60
   61 AGLCNYAFRS CIDLFRWLII DSGGQLTGYS PYAWNASRLW AIAFPITGAI VMFPLFIKFR 120
  121 EDMAFGFPRF LETVNLRGGR LPLRLMFTRG ISSALTIGSG GSAGQEGPIA QIGGTAGSVV 180
  181 GHLLGMSGER LKVLIGCGVS GGVAATFNAP LAGVFFAHEI VLLSSFELSS FTSIVISSGM 240
  241 ATVVSRAMYG DIPAFDVPAY QLVHPLELAF YALLGVVCGC LAALFITGYG KTRDMFSRLP 300
  301 INPLWKPLLG GFLVGCVAVL LPQVQGNGYE FIEKAVSNDV GWLLVTLLIV GKMVATCVTV 360
  361 GSGLPGGTFA PSLFIGSVTG MSFGFLANSL FPYQTATPGA YALVGMGAFL ASVTHAPMTG 420
  421 IFLLFEMTGS YKVIVPIMLA CAIGTAVARH FHKDGIDTAD LAAQGIDLRA GREQRVLERI 480
  481 RVKGVMMRDP EILPETMTIR QFLARSHSPR QTTFPVVTGG GELSGVVVIH DFLGIAFEQE 540
  541 LLDQVTLGEM AAVDILTVTS EDTLAKALQI FERTPLDELP VVEPGGQRRV VGILTRHAIT 600
  601 GAYNRAMVTQ SLKE