YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39997448, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	3	0.93
Transmembrane Helix	4	22	0.89
Cytoplasmic	23	42	0.75
Transmembrane Helix	43	66	0.74
Non-Cytoplasmic	67	73	0.67
Transmembrane Helix	74	93	0.88
Cytoplasmic	94	113	0.91
Transmembrane Helix	114	135	0.89
Non-Cytoplasmic	136	146	0.83
Transmembrane Helix	147	167	0.89
Cytoplasmic	168	176	0.65
Transmembrane Helix	177	196	0.89
Non-Cytoplasmic	197	252	0.93
Transmembrane Helix	253	274	0.91
Cytoplasmic	275	285	0.88
Transmembrane Helix	286	309	0.90
Non-Cytoplasmic	310	344	0.93
Transmembrane Helix	345	373	0.86
Cytoplasmic	374	392	0.92
Transmembrane Helix	393	414	0.93
Non-Cytoplasmic	415	419	0.89
Transmembrane Helix	420	443	0.88
Cytoplasmic	444	449	0.77
Transmembrane Helix	450	469	0.94
Non-Cytoplasmic	470	536	0.95
Transmembrane Helix	537	556	0.93
Cytoplasmic	557	584	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTIPIFLII IGVTMAVVVW SAKRTKSAAD FYTAGGGITG TQNGWAIAGD YMSAASFLGI  60
   61 SGIISLYGYD GFMYSVGWLV AYITVLLIVA EPCRNAGKYT LGDILSFRTE PKPVRAVAAL 120
  121 STVTVSTFYL TAQMVGAGKL MQLLIGIPYK FAIIGVGILM VGYVVFGGMT ATTWVQIIKA 180
  181 GLLMSGAFLL SILVGLKSGM SPFQFFTDIA TSPNIIEHVQ KVVLKDPVAV AGFDYGQRFL 240
  241 EPGLFLKQPL DQISLGMALV LGTAGMPHIL MRFFTVPTAQ AARKSVIVAM FIIGSFYILT 300
  301 TLLGFGAAIH VTPQAISKVG KGGNMAAMML AQQLGGDISP FIGDLLLAFL CAVAFATILA 360
  361 VVSGLVLAAS AAIAHDIYVN VIKDGHADQH EQVMAARITS LCVGAAGIVI GIAAENQNVA 420
  421 HLVALAFAVA SSGNLPVVVM SLFWRKFNTA GVISGLVVGT VAAIALVMIS PNMTYPKKVA 480
  481 ADAQKVVTVL EKKQADGAVL TEKEMKDLDK AKADYEKNKD GKSMLGLDAP LFPLKNPGII 540
  541 SIPLGFLAAI IGCLAFPSRR SEEMFDEIYV RQNTGIGMAK AVDH