YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39997410, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.93
Transmembrane Helix	21	40	0.92
Non-Cytoplasmic	41	45	0.63
Transmembrane Helix	46	66	0.89
Cytoplasmic	67	72	0.78
Transmembrane Helix	73	95	0.86
Non-Cytoplasmic	96	101	0.73
Transmembrane Helix	102	121	0.91
Cytoplasmic	122	128	0.74
Transmembrane Helix	129	151	0.85
Non-Cytoplasmic	152	175	0.92
Transmembrane Helix	176	197	0.93
Cytoplasmic	198	203	0.88
Transmembrane Helix	204	226	0.84
Non-Cytoplasmic	227	250	0.87
Transmembrane Helix	251	272	0.86
Cytoplasmic	273	289	0.75
Transmembrane Helix	290	310	0.80
Non-Cytoplasmic	311	322	0.73
Transmembrane Helix	323	344	0.90
Cytoplasmic	345	352	0.63
Transmembrane Helix	353	372	0.91
Non-Cytoplasmic	373	389	0.68
Transmembrane Helix	390	415	0.87
Cytoplasmic	416	590	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLTPSSLLP EWLRSYRPAD LLPDLAAGAV VAVILAPQGM AYALLAGLPP IMGLYAATVP  60
   61 LLAYALAGSS RHLSVGPVAI VSLLVHVACS KVAHAGSASY VSAALQLALL TGVLQLLLGT 120
  121 VRAGFMVNFL SRAAIGGFTS AAALLISLSQ FKNLLGISGD GGESALELAA GVVRNIGTLH 180
  181 LLTSVMGLAA ICMLLLLQRF APRFPAPLAA IVLGIPLTAL LHLDQAGVRT VGDLPHGLPP 240
  241 LSLPPFAADQ ILTLLPAAVT IALIGYLESF AVAGLIADRE KYPIYPNREL VGLGIANVAA 300
  301 AFFSGYPVTG GFSRTAVNHR AGARTGLAGM ITATLIGIIL LHFTHLFHYL PKTILAAIVI 360
  361 VAVAGLVEAA EARYLFRVKP SDGYTFVLTF LVTLGFGVEA GIVAGVIFSL LVFIWRSAHP 420
  421 HIAELGWLEE EGVFRNIRRY PHAVVPRGML LVRVDASLYF ANMAFVGDWL RATLAERADV 480
  481 RQIIFDLSGV NDMDAVALAA LEVIIEGHGE RGIVVAFAGM KGPVRDLAQR AGWQERYGNL 540
  541 ISFLSLNQAV RQMSTEDMIL AGLHSKERES ETCSVPATRP TGSTNHGDPA