YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39997358, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTFKRILHY SKPYWWRIVI SMAASLCVGG TDAAIAWMVE PLLKKIFSER DMTIFILVPV  60
   61 ALIIVFLFRG VARFLQGYYV QTAGQLAIQD IRNEVYRKQI GLPLRYFTDN PTGTLMSRIM 120
  121 SDVGQMQQGV ANIVTSLLRD GVTAIGLLGV IFYRNWQLAL ITFIVLPLTA VPAQKIGKRI 180
  181 KNLAKQSLGQ MGEITSILQE TFSGIKVVKA FRQEKSVVDR FSRTNLGLYR YLRKSIKYES 240
  241 LHTPIMEIIT SFGVAGVIWF GGSQVMDGKM TAPEFFSFLT AMVMLYGPIK KVLSAYNTVQ 300
  301 QAMGAAERVF EVIDHPADIQ DPPDPVEPGM VRGSVELRNV SFRYDDEEVL RDVSFTAGRG 360
  361 EVVALVGPSG AGKTTVMSLI PRFYDVTGGA VLIDGIDVRR LRLDDLLCQI ALVDQETILF 420
  421 NETIANNIRL GNPDATLEEV ERAARSAFAH DFIMEMPEGY DTNIGDRGVR LSGGQRQRLC 480
  481 IARAILKNAP ILLLDEATSA LDTESEHMVQ QALTNLMKNR TTLVIAHRLS TVLHADRIVV 540
  541 IDKGEVVEVG TNDELLARDG LYRKLYDMQF K

Type	Start	End	Confidence
Cytoplasmic	1	13	0.71
Transmembrane Helix	14	36	0.91
Non-Cytoplasmic	37	51	0.64
Transmembrane Helix	52	72	0.92
Cytoplasmic	73	128	0.69
Transmembrane Helix	129	151	0.52
Non-Cytoplasmic	152	155	0.57
Transmembrane Helix	156	176	0.74
Cytoplasmic	177	239	0.96
Transmembrane Helix	240	262	0.87
Non-Cytoplasmic	263	269	0.85
Transmembrane Helix	270	289	0.70
Cytoplasmic	290	571	0.77