YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39996323, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.94
Transmembrane Helix	16	36	0.94
Cytoplasmic	37	56	0.78
Transmembrane Helix	57	77	0.87
Non-Cytoplasmic	78	92	0.84
Transmembrane Helix	93	114	0.92
Cytoplasmic	115	123	0.74
Transmembrane Helix	124	143	0.93
Non-Cytoplasmic	144	164	0.91
Transmembrane Helix	165	187	0.87
Cytoplasmic	188	202	0.83
Transmembrane Helix	203	223	0.90
Non-Cytoplasmic	224	233	0.78
Transmembrane Helix	234	255	0.92
Cytoplasmic	256	261	0.84
Transmembrane Helix	262	281	0.87
Non-Cytoplasmic	282	284	0.76
Transmembrane Helix	285	304	0.92
Cytoplasmic	305	313	0.95
Transmembrane Helix	314	336	0.87
Non-Cytoplasmic	337	351	0.74
Transmembrane Helix	352	372	0.93
Cytoplasmic	373	406	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSLSMVTGL RNSADVLFLM LGAVMVFAMH AGFAFLEVGT VRKKNQVNAF VKILTDWSVS  60
   61 TVAYFLVGFP ISYGISFLVP AGDLLGTTQG YDLVRYFFLL CFAACIPAII SGGIAERAKF 120
  121 WPQVLAGAIF AGVSYPLFES LIWGQNASLL QGFFKSVGGA EFHDFAGSVV VHSVGGWLAL 180
  181 PAVLVLGPRM GRYVRGKSHP IPISNIPFLA LGSWILAVGW FGFNVMSAGH VEKISGLVAV 240
  241 NSLLAMVGGV LAAIVAGRND PGFVHNGALA GLIAICAGSD IMHPLAAFAT GAVASVIFVY 300
  301 GFQYEQERLK IDDVLGVWPL HGVIGTWGGI AAGIFGQPLF GGMGGVSFVS QFLGSLAAVV 360
  361 FALVNGFLVY GILSRTVGIR LTDEQEFAGA DLSIHQIGAY PEDHVR