YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39982937, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	3	0.92
Transmembrane Helix	4	22	0.88
Cytoplasmic	23	42	0.69
Transmembrane Helix	43	64	0.70
Non-Cytoplasmic	65	71	0.70
Transmembrane Helix	72	93	0.86
Cytoplasmic	94	112	0.92
Transmembrane Helix	113	132	0.95
Non-Cytoplasmic	133	148	0.79
Transmembrane Helix	149	170	0.88
Cytoplasmic	171	179	0.68
Transmembrane Helix	180	199	0.92
Non-Cytoplasmic	200	252	0.96
Transmembrane Helix	253	274	0.91
Cytoplasmic	275	285	0.88
Transmembrane Helix	286	309	0.91
Non-Cytoplasmic	310	344	0.92
Transmembrane Helix	345	373	0.86
Cytoplasmic	374	392	0.88
Transmembrane Helix	393	414	0.92
Non-Cytoplasmic	415	419	0.85
Transmembrane Helix	420	443	0.88
Cytoplasmic	444	449	0.74
Transmembrane Helix	450	469	0.93
Non-Cytoplasmic	470	536	0.90
Transmembrane Helix	537	556	0.92
Cytoplasmic	557	584	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTIPIFLII IGATMAVVVW SAKRTKSAAD FYTAGGGITG TQNGWAIAGD YMSAASFLGI  60
   61 SGMISLYGYD GFMYSVGWLV AYITVLLIVA EPCRNAGKYT LGDILSFRTE PKVVRAVCAI 120
  121 SVVAVSTFYL TAQMVGAGKL MQLLLGIPYK FAIIGVGILM VGYVVFGGMT ATTWVQIIKA 180
  181 GLLMTGAGLL SVLVGLKAGM NPFTFFNDIA TNPNIIEHVQ KAVLKDPVAV AGFDYGQRFL 240
  241 EPGLFLKNPL DQISLGMALV LGTAGMPHIL MRFFTVPTAQ AARKSVIVAM FIIGSFYILT 300
  301 TLLGFGAAIH VTPQGITAVD KGGNMAAMML AQQLGGDISP FLGDLLLAFL CAVAFATILA 360
  361 VVSGLVLAAS AAIAHDIYVN VIKDGHADQH EQVMAARITS LCVGAMGIII GIAAEKQNVA 420
  421 HLVALAFAVA SSGNLPVVVM SLFWRKFNTA GVVSGLVVGT VASIALVMVS PNMTYPKVVA 480
  481 ADAQKVVTKL EEKQAGGAVL TEKEMKDLDK AKADYAKNKD GKSMLGLDKP LIKLKNPGII 540
  541 SIPLGFLAAI IGCLAFPSRR SEEMFDEIYV RQNTGIGMAK AIDH