YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39982935, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.71
Transmembrane Helix	6	22	0.89
Cytoplasmic	23	43	0.72
Transmembrane Helix	44	66	0.75
Non-Cytoplasmic	67	73	0.67
Transmembrane Helix	74	93	0.88
Cytoplasmic	94	113	0.90
Transmembrane Helix	114	135	0.89
Non-Cytoplasmic	136	146	0.85
Transmembrane Helix	147	169	0.85
Cytoplasmic	170	179	0.63
Transmembrane Helix	180	199	0.90
Non-Cytoplasmic	200	252	0.96
Transmembrane Helix	253	274	0.91
Cytoplasmic	275	285	0.89
Transmembrane Helix	286	309	0.92
Non-Cytoplasmic	310	344	0.94
Transmembrane Helix	345	374	0.85
Cytoplasmic	375	394	0.88
Transmembrane Helix	395	414	0.92
Non-Cytoplasmic	415	420	0.79
Transmembrane Helix	421	443	0.91
Cytoplasmic	444	449	0.73
Transmembrane Helix	450	469	0.93
Non-Cytoplasmic	470	536	0.88
Transmembrane Helix	537	556	0.91
Cytoplasmic	557	584	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTIPIFLAI IGATMMVVVW SAKQTKSAAD FYTAGGGITG TQNGWAIAGD YMSAASFLGI  60
   61 SGIISLYGYD GFMYSVGWLV AYITVLLIVA EPCRNAGKFT LGDILSFRTE PKSVRAAAAI 120
  121 STVAVSTFYL TAQMVGAGKL MQLLLGIPYK TAVIGVGILM VGYVVFGGMT ATTWVQIIKA 180
  181 GLLMSGAALL SVLVGLKSGM SPFQFFNDIA TSPNIIEHVQ KVVLKDPVAV AGFDYGQRFL 240
  241 EPGLFLKNPL DQISLGMALV LGTAGMPHIL MRFFTVPTAQ AARKSVIIAM FIIGSFYILT 300
  301 TLLGFGAAIH VTPQSIMNVD KGGNMAAMML AQQLGGDIHP FLGDLLLAFL CAVAFATILA 360
  361 VVSGLVLAAS AAIAHDIYVN VIKGGHADQH EQVKAARITS FVVGACGIAI GIAAEKQNVA 420
  421 HLVALAFAVA ASGNLPVVVL SLFWKKFNTA GVIAGLVTGT VVSIALVMVS PNMTYPKKVA 480
  481 EDAQKVVVKL EEKQAGGAVL TEKEMKDLGK AKADYEKNKD GKSFLGLDKP LFALKNPGVV 540
  541 SIPLGFIAAV IAALAFPSRR SEEMFDELYV RQNTGIGIAK AVDH