YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39996043, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	25	0.99
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	75	0.98
Transmembrane Helix	76	98	0.94
Cytoplasmic	99	108	0.84
Transmembrane Helix	109	132	0.88
Non-Cytoplasmic	133	178	0.96
Transmembrane Helix	179	199	0.91
Cytoplasmic	200	205	0.86
Transmembrane Helix	206	227	0.89
Non-Cytoplasmic	228	242	0.88
Transmembrane Helix	243	265	0.89
Cytoplasmic	266	279	0.81
Transmembrane Helix	280	297	0.89
Non-Cytoplasmic	298	313	0.73
Transmembrane Helix	314	336	0.92
Cytoplasmic	337	345	0.83
Transmembrane Helix	346	365	0.94
Non-Cytoplasmic	366	371	0.71
Transmembrane Helix	372	390	0.95
Cytoplasmic	391	402	0.85
Transmembrane Helix	403	425	0.90
Non-Cytoplasmic	426	436	0.78
Transmembrane Helix	437	461	0.88
Cytoplasmic	462	489	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWKRSIITL ALAAAAFMAP AAVLAEEAKA PAVAATQAAV TSAQAAPAAV APAEAAPAAA  60
   61 EAPKVAEPVL NTGNTAWMLV CAALVLLMLP GLALFYGGMV RSKNVLSTLM HSFVAMGIVG 120
  121 VQWAVIGYSL AFGPDMGGMG LVGDFSRALL NGMISFKDGA PVYTLWQNVT SEPNAIPEYV 180
  181 FAMFQGMFAM ITVALISGAM AERVKFSAYC VFVLLWTTLV YDPLAHWVWM VDGWLFKKGA 240
  241 LDFAGGTVVH LSSGISALAF LVFLGKRHGF PHERMAPHNL SMTMLGVGLL WFGWFGFNAG 300
  301 SAVVGVNNVD AAGGLAGLAF ATTTIAPAAG GLAWMIAEWI HAGRPSALGF GSGVVAGLVG 360
  361 ITPAAGFVQP GAAIIIGLGA GVICYLGVLM KAKLKYDDSL DAFGVHGVGG TFGALVTGVF 420
  421 ATVGATGLLS GNVSQFITQV IGVVSAGAYA FIVTLVIAFI LDKTIGLRVE KEDEIMGLDQ 480
  481 TQHSESAYN