YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39996035, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.67
Transmembrane Helix	8	32	0.77
Non-Cytoplasmic	33	33	0.42
Transmembrane Helix	34	54	0.66
Cytoplasmic	55	58	0.63
Transmembrane Helix	59	77	0.82
Non-Cytoplasmic	78	83	0.58
Transmembrane Helix	84	103	0.90
Cytoplasmic	104	117	0.71
Transmembrane Helix	118	139	0.90
Non-Cytoplasmic	140	152	0.84
Transmembrane Helix	153	172	0.93
Cytoplasmic	173	182	0.74
Transmembrane Helix	183	208	0.82
Non-Cytoplasmic	209	224	0.73
Transmembrane Helix	225	247	0.72
Cytoplasmic	248	301	0.69
Transmembrane Helix	302	323	0.87
Non-Cytoplasmic	324	330	0.64
Transmembrane Helix	331	352	0.92
Cytoplasmic	353	362	0.64
Transmembrane Helix	363	380	0.81
Non-Cytoplasmic	381	384	0.59
Transmembrane Helix	385	404	0.85
Cytoplasmic	405	416	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHHQEPVWR QAIAGAQILF VAFGALVLVP ILTGLNPSMA LLGAGIGTLI FQACTGRKVP  60
   61 IFLGSSFAFI APIIYSVQTW GIPATLSGLF ASGALYLMLA LLIKMRGVAF IHRIMPPVVV 120
  121 GPIIMLIGLG LAGVAVNLAM GKTGDGKAVL VDYQTALLVA GVSLATTVVI ALKAKGIFRL 180
  181 IPILAGVTVG YSLSAFLGLV NFSTIAAAPW FAMPPFVAPQ WSWPAVFFMI PVALAPAIEH 240
  241 VGDIIAIGAV TGRDYTARPG LHRTMLGDGL AVCVAGLIGG PPVTTYSEVT GAVMITRNHN 300
  301 PVIMTWAACI AILMAFFGKF NALLQSIPTP VMGGIMILLF GSIAAVGLNT LIHARVDMHR 360
  361 PRNLVIVSLV LVFGIGGLTL QAGWVTLQGV SLCGITAVLL NLFLPKEKRD SAQQAF