YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39995682, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	5	0.81
Transmembrane Helix	6	25	0.84
Non-Cytoplasmic	26	32	0.80
Transmembrane Helix	33	52	0.84
Cytoplasmic	53	86	0.85
Transmembrane Helix	87	108	0.92
Non-Cytoplasmic	109	115	0.79
Transmembrane Helix	116	137	0.93
Cytoplasmic	138	156	0.90
Transmembrane Helix	157	180	0.91
Non-Cytoplasmic	181	189	0.81
Transmembrane Helix	190	210	0.94
Cytoplasmic	211	219	0.80
Transmembrane Helix	220	238	0.96
Non-Cytoplasmic	239	252	0.87
Transmembrane Helix	253	275	0.91
Cytoplasmic	276	282	0.89
Transmembrane Helix	283	303	0.91
Non-Cytoplasmic	304	321	0.84
Transmembrane Helix	322	343	0.92
Cytoplasmic	344	360	0.91
Transmembrane Helix	361	383	0.93
Non-Cytoplasmic	384	389	0.78
Transmembrane Helix	390	407	0.64
Cytoplasmic	408	425	0.54
Transmembrane Helix	426	447	0.77
Non-Cytoplasmic	448	454	0.53
Transmembrane Helix	455	474	0.75
Cytoplasmic	475	494	0.79
Transmembrane Helix	495	514	0.97
Non-Cytoplasmic	515	521	0.74
Transmembrane Helix	522	546	0.83
Cytoplasmic	547	552	0.75
Transmembrane Helix	553	575	0.85
Non-Cytoplasmic	576	593	0.77
Transmembrane Helix	594	614	0.88
Cytoplasmic	615	642	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAKGFWLVV SLVAACSLAV VAGVVNPAEK VNALWLVTAA ACFYMVAYRF YGAFLAARVL  60
   61 SLDPALRTPA RRLADGMDFH PTNRWVLFGH HFAAIAGAGP LIGPMLAAQF GYLPGFLWIL 120
  121 IGSVLVGAVH DMVILGASVR RNGRSLAQIA KDEIGPVGGL AASLAILFIL IVALAGLGLA 180
  181 VVNSLAKSPW GTFTIFLTIP IALFMGLYLY KIRPGRVGEV SAIGFVLLLA AVFAGHYIPG 240
  241 SPIEPYFNLS KHGLVVAMAA YGFVASILPV WMLLCPRDYL STYMKIGTVL LLACGVIFMA 300
  301 PTLQMPPVTR FVSGGGPIIP GTLFPFMFIT IACGAISGFH SLISSGTTPK MITSEREIPM 360
  361 IGYGAMLAEG FVAVMALVAA TILIPGDYFA INTKLSFDAI AALGFPVERV RELSALVGTD 420
  421 VAGRPGGAVS LAVGMASILS SLPGMAGLMP YWYNFALMFE ALFILTTVDT GTRVARFLLQ 480
  481 ELGSRVYAPL GQPRWLPGII ATSLMVVVAW SYLIWSGNVS TIWPMFGVSN QLLAAIALGI 540
  541 GTTVLIKGGK VRYAWTTALP MAFMYVTTFA ASWQLTGSFL RKAATAPTAA EALTFRINGG 600
  601 LVAVMAILAV VTLGDMLHKW YGYLTSTRPV VTSEVLEYEE AA