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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|85103357
Protein type: Transmembrane
Type Confidence: 0.82
Topology Confidence: 0.75
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMMNALWSR STSSSGDSAE KSAKPPSDAV STTSEQVADL SDRPNAPALP ARPALHRNQP  60
   61 SAPPPAAPSN PPPPVPSGAG SGNAANNASA QPQDSLSLAQ LRRIVAEFPK SEPIAYDYVY 120
  121 TDVGPIEEEV DEWFLYNFWQ WVRLNTANRA FDSTWESMFG EDETWDSVGD DDRQRFVRNA 180
  181 VQQLQTSTDK TARGEAIGTL VYIVLGRWAE TVKAASLPNF ADHKVRSAAT KQQLDAMKAG 240
  241 VKLLAECGGI PPMWDALRRA FEPFWADDGD VGQIVQAYAE ELMHLMTILY ISLQTTLDDL 300
  301 EDMASARKEL LALNPNLVHF MLHATAKLRW DDRNILPQTQ VGSTTFGIPG AANQHRMLMS 360
  361 SQVFLLFWKS LLLVFGGSKH IAEAKKATAE TPSDVKDKEI ITASPLDYHV FRQEITSKYP 420
  421 SYIPPQCAIP LEAEQTSILP PLPNHPTRNN GQNGILPGPP NQSASASILH QPVHIATPAP 480
  481 SPPPSPGVGG KGGKKQNYQT NQNFPFMYPP LDATSNSAGG KGVAGLQDLL VGRKWEGSDV 540
  541 PASIIEAGEL FSTRTRMTRA TRQLWEERER FLKFERGWEG VDEDLIDELD LSELTLEEKE 600
  601 ELGLLKESDK KKDKLGHEID LGPRPVDDDI KHRLEAVEEF YKEALPHLQS LVIVLLKAIV 660
  661 AIASSLVQPQ PGQQNPGAPQ NNGRVSGGPP QGRGQSNGNN AGNDPPSPSD DNVDEARSRE 720
  721 IAAKAVTGIM ILLLKWLKLS HILKFEYFTQ LLLDSNYLPL VLKLFALHDV QQVVESKTDR 780
  781 IEHSFFYFCG SRAGAIPQQG LINPTATDFE DVDVSEDEAA PPAIKRNRSP PGAEKGGPPD 840
  841 ASSQFISSQP PQQQQQQSEN SGVPSRPEVD ELGYPVNPLP KEPITDFSRR NFFSLINYLR 900
  901 VMQKICKHKA HRNLLLVHYK SSNILRKSLK VPQQELRLYT LKLFKNQVPY CGRKWRQSNM 960
  961 RVITAIYLHC RPELRDEWLS GSDVDAEVEE ALPLEQALRS LTHWFNVQRY PERMGAEVTA1020
 1021 AMREERDFFT RELEKSDWMG WEGIMAGGGM GMDGAGGAEP MMGMPGMGMG MGIGGLPGMG1080
 1081 GMAGIEYAAA AAAAQTEHES SMGWS

YRC Informatics Platform - Version 3.0
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