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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|18376053, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNSHSTNHD AAAAAAPAAA SVSPARLAAA AAAAGQDASS FSDITSTSSP SAESSPCRLV  60
   61 PPVDPPELDQ EHGIIVSAPC LSPGPPPPPP PAVDGHHQPG HCGAPPPAAA APAAVPTPTT 120
  121 PLVITDNTTD RTVAHAAAAA AAADPIKYHR GPAAYLQRHP SGPGASLLTQ AFATARGTNH 180
  181 NNPQHQQQQH QQQQQQPPLL ADNTLQPQPQ VVSSSHLLTT VPSESHTRPL PPPQDPRYSQ 240
  241 DEEEDALTPR AGSPRNSIFH KTQHTMASMT ATVTSTATMT GPPLGNAIEL DLRQVNSMLK 300
  301 GHREYLTKNK GRARSPERLE STGADNSTHP VISTKLSESP TALINNNNNN NNNNHDGAAD 360
  361 NGDNAIPRLR KDQRAQTVPE KAWSIGVGEL TDDQDGQVEK SITEVLAGVE PNARSRKASH 420
  421 SLRFFKEGLP DEKSKKKDAK RERLASTAEE AEETETEGEG KPRAPTTVPA STSEDTQLPE 480
  481 TDEPSQARSI PLLTPESPTD NNNNTAPDYF LSKPVEEPAQ LKHQPPATPG REHTSALQDT 540
  541 AAAVGKSSPS LDRKPEPRRK SDASIEGGSH TEEGEESGEE KISSAVFLPH QGPEEAEEEH 600
  601 SDVPGAASSR TALPSRTHSR AEDFHSWLVK AGEPEVECLD ECPDVEKTHR PAKPAADSAA 660
  661 TVPFVGSQID TGKVNEPAVA DEIETGVPPP QKPFQSIAHH SRHHDHHHHH HRHPEEAIHD 720
  721 HQGEPKEEQP LDAIELIPYK HQVGGHTTLW RFSRRAVCKQ LNNRENEFYE KIERYHRDLL 780
  781 AFLPRYIGVL NVTFQKKPRR KSVHKKDEAA AALEAPTAGQ DEATSSGVKG DEAAPTTHGA 840
  841 QPAQPEQRMI SQSLQQPLGQ IPTVTFVDNQ HILPRSLIQP ALASSSSFTR LRSASSASLH 900
  901 GRRIMNGQCA ENPSHMLRPR LEDRHANSWG ATMVNKRLRN EVFNDAFLKQ PVAVHRHKKG 960
  961 HQRPFSRRSL QPVLRHTESD PNLDVAQDAK PRASSAGEES RLKPCDLVRS EENLATRPRS1020
 1021 FREEGVEDDG PKDVTGTSAP EPEILKDASP AQPKKKRRYS GTGLRRKPKD VEDSRGDLQY1080
 1081 FEEADSAPYK ADNEEPVFES GGVPGVPAEE SIGPLDTTHN GTNGTNGVDA SVNTDDLAPS1140
 1141 SPHNEIAKIP RPINPKEAQT QTDSRVEYFL LLEDLTAGMK RPCIMDLKMG TRQYGVEASP1200
 1201 KKQKSQQGKC AKTTSRELGV RVCGLQVWDV ATQSYVFKDK YYGRDLKAGQ EFQDALTRFL1260
 1261 YNGVDRASIL RHIPTVLQKL AELEVIIRRL KGYRFYAASL LMFYDGEPLP PPAPPTPSTT1320
 1321 THSEYDTAME DYYSTDFATD NDDAVSIKHR IDNTLNGSSG SGGGKKKKDK HEIDFKMADF1380
 1381 ANCVTAEDLA ANGIEGKPCP PRYPQEPDNG FLRGLRSLRR YFLRIQRDVR RELGLGTWRA1440
 1441 VDEEIEREMM EDAAYGAEED EGFVSE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle