YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18376330, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLFSVPIFL LVFRETIETS IIVSVLLVFL KQTLASPSSS SSPAEAISHA AATAAAADDD  60
   61 ELKHPSSSST TNNNSDSPQQ QPVVVDLRVY NALRRQILLG TVLGFILCIA IGGAVIGVFY 120
  121 TLGVNKWESS GAELNWEGAF CLLASVIISV VGAALLRVGR MKEKWRGKMI KAMEGKEKNK 180
  181 KKSKGGRVAG GEEDMERGET VERQRGWWVK FKAWMERYVM FILPFVTVLR EGVEAIVFVA 240
  241 GVSFAAPATS IPIPAIVGVI VGSLVGVVLY KFGSSTKLQL FLVLSTSLLY LVAAGLFSRA 300
  301 IWALESQQWA KAIGSDAVEL GSGPGSYDID KSVWHVDCCS PQVNGGGGWG IFNAIFGWTN 360
  361 SATYGSVIGY DLYWLVVIVS FLVMRYREVK GKWPLIPQKT EVEDGSEKGS LFGRLSWRKG 420
  421 RA

Type	Start	End	Confidence
Cytoplasmic	1	96	0.85
Transmembrane Helix	97	120	0.91
Non-Cytoplasmic	121	137	0.87
Transmembrane Helix	138	159	0.94
Cytoplasmic	160	217	0.97
Transmembrane Helix	218	240	0.85
Non-Cytoplasmic	241	250	0.67
Transmembrane Helix	251	270	0.95
Cytoplasmic	271	279	0.79
Transmembrane Helix	280	302	0.92
Non-Cytoplasmic	303	361	0.95
Transmembrane Helix	362	384	0.84
Cytoplasmic	385	422	0.96