YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28917093, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFTDAPVTK ALVLGLVGLS IAASVFDIKH YFYISIGTHF LRYGQLWRML TYQLCYTNSS  60
   61 EVLFGAMSLY HMRMVERFWG SRKYASFILL AALFTAIIPP IFLTVVLRPL SFGVLDYIPA 120
  121 GPTPILFAIL AQYHAMIPQI YKYKVALSAK TPSNASDDTS GFIFSDKSTR YLMALQLALF 180
  181 QWPGSLLGAV IGWAVGYLWR NDLLPSAVAR WRVPGWVVGL RAQKRNDRFD GIRRRLEDEG 240
  241 ASTGVATGAQ PAAEGEGSRR RPLGQQLIDE VRGAF

Type	Start	End	Confidence
Cytoplasmic	1	10	0.80
Transmembrane Helix	11	31	0.89
Non-Cytoplasmic	32	49	0.84
Transmembrane Helix	50	72	0.84
Cytoplasmic	73	83	0.87
Transmembrane Helix	84	107	0.88
Non-Cytoplasmic	108	116	0.73
Transmembrane Helix	117	136	0.76
Cytoplasmic	137	176	0.74
Transmembrane Helix	177	197	0.90
Non-Cytoplasmic	198	275	0.67