YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32394376, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVEKLTLRA NITEVQLVTH SLWEVIAIAT VSAIVSFITI IGNILVMLSF KVNSQLKTVN  60
   61 NYYLLSLAFA DLIIGVFSMN LYTSYILMGY WALGSLACDL WLALDYVASN ASVMNLLVIS 120
  121 FDRYFSITRP LTYRAKRTPK IAGIMIGLAW LVSFILWAPP ILCWQYFVGK RTVPERQCQI 180
  181 QFFSEPVITF GTAIAAFYFP VSVMTILYCL IYKETERRTK DLAELQGINS STNSSGDAQP 240
  241 QKIRSCFGCK HVSNTSRTQA LSHTNAAKTL DDQLTNFNSY ASSEEEDRSG NFQESCRHQE 300
  301 NKSESYEEEN FFPTPVKASP TKTKKCVSYK FKPKDVSPLK NTNGDAKPGA SSFSSAESVN 360
  361 APSSSSSSKP IDGTLKCQIT KRKRMVLIKE KKAAQTLSAI LLAFILTWTP YNIMVLISTF 420
  421 CSDCIPLSLW HLGYWLCYVN STVNPMCYAL CNKTFQKTFR MLLLCQWRKQ RAEEKLYWCG 480
  481 QNPAVGSKLT

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.95
Transmembrane Helix	25	48	0.90
Cytoplasmic	49	61	0.84
Transmembrane Helix	62	83	0.89
Non-Cytoplasmic	84	101	0.75
Transmembrane Helix	102	121	0.87
Cytoplasmic	122	140	0.85
Transmembrane Helix	141	161	0.91
Non-Cytoplasmic	162	189	0.92
Transmembrane Helix	190	212	0.92
Cytoplasmic	213	392	0.99
Transmembrane Helix	393	414	0.85
Non-Cytoplasmic	415	430	0.76
Transmembrane Helix	431	451	0.75
Cytoplasmic	452	490	0.85