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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|30022804, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.44
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIWNWLRKKK KSNKPEANET DNQEQHSNNE EDDNKEQTRS MKHNKGKNHE QKDSSQDKQQ  60
   61 STKQKDSSQD KQQSTKQEDS SQDKQQSTKQ EDSSQDKQQS TKQKDSSQDK QQSTKQEDSS 120
  121 QDKQQSAKQD EPSQDKQQNS KQDDSSQDKQ QSAKQEDSSQ DKQQNSKQDD SSQDKQQNSK 180
  181 QDDSSQDKQQ STKQEDSSQD KQQGAKQGDS SQDKQQNAKQ DEPSQSKQQH SKGNSIYDFT 240
  241 KPEKDRIHSL QNLIEKLKKS SDFVNYHTSD DETMPYWISY YRPSLDGEKL QKYLMPTLLE 300
  301 RPNASLEELK EHIPMSGITI TNDLQKIEDM VLKGHAIIQL NQQDQKCMLA NIAIDNYRAP 360
  361 TPPLNESTVI GPQEGFVEDI DTNINLVRKR LPVLDLQTKE MIIGEFSKTK VVMMYLDNLA 420
  421 EKDNVDFLEE SLRALEYDQI NDSAYLQELM GEKSIFPLYI NTERTDRVTK ALIDGKIAIF 480
  481 VDGSPSVLLT PVSYFDFFIS PEDYNVSWMY ATFSRILRLI AVLFSICATP LYVAVLNYHY 540
  541 ELIPSDLLET LILSRAQVPF PPLIEALFLE LAIDLLREAG ARLPMKVGQT LGIVGGIVIG 600
  601 QASVQAGLTS NILLIIVALS ALASFITPIY KMGNAVRLLR FPFLMFAEIG GLFGISLGFI 660
  661 FLFTHLFRLT SLRKPYALFY PTRQQSVKDS WIRFPLTMID TRDVQARPQH VKKAAKGIST 720
  721 KHRSDFDD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle