YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30018820, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREKKEQQES TGQKHMFPSL PENINYIENK LSHSDDIKKL DLPFQNGKGI IIYIESLADP  60
   61 NLIHQLALEP LLTRSDLSLD KAFSTLNMKK ETNLNYGVQL LLQGKSLYFH EHVDSFFIFE 120
  121 TALSLKRDIA EPDNEGIVRG PHTGFVEDLA TNLASIRKLI KSPNIVVKYF TLGEEMHTKV 180
  181 AIAYMQNIAN DDLVTEVKRR LETIKTDALM PPGYIQEFIE DTSFSPFPQQ LNTERPDRTA 240
  241 ANLMEGRVAI LSDGDPTALI VPVTLFAFYQ SPDDYNNRWI VGSFVRMIRL VSFLIAFLLP 300
  301 AIYIATVAFH PDVLPLELVY TIKASLEKVP LPPIFEALLM ELIFELLREA GIRLPSRVGQ 360
  361 TIGIVGGLVI GDAIVKAGLV SYTMIIVVAL TAISSFLVPS NDMSSAVRIL RFPLMILAAI 420
  421 FGYVGISFGL IITFVHLCQL HSFHTPYLSP VAPMRIKDMK DSFVRLPIWS FWERPHDPKP 480
  481 KKMQRQHVTR EDEDGDKHAK

Type	Start	End	Confidence
Cytoplasmic	1	287	0.91
Transmembrane Helix	288	309	0.91
Non-Cytoplasmic	310	377	0.67
Transmembrane Helix	378	398	0.90
Cytoplasmic	399	413	0.73
Transmembrane Helix	414	436	0.91
Non-Cytoplasmic	437	500	0.87