YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29893870, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYTMLSMIGM GAWIGASLDT YQRFLKRQER KRWLVFIHDI LFWIVQALFV FYVLLLVNEA  60
   61 ELRIYVFLAL LCGFAAYQSL LKALYMKLLN FLIYIFMQTT YFFVRIIQLL MIKPVIIIAQ 120
  121 LFIAFILFLF RILLSIGHVL WKMVIWILLF IWKVFFWPVR FIASLIWKLL PNRVKLFIVK 180
  181 HIGFLQYIAK LKGHIFQLWE HIKKKLGGPR K

Type	Start	End	Confidence
Cytoplasmic	1	33	0.59
Transmembrane Helix	34	56	0.92
Non-Cytoplasmic	57	61	0.90
Transmembrane Helix	62	81	0.88
Cytoplasmic	82	87	0.73
Transmembrane Helix	88	109	0.68
Non-Cytoplasmic	110	114	0.51
Transmembrane Helix	115	134	0.89
Cytoplasmic	135	142	0.47
Transmembrane Helix	143	167	0.75
Non-Cytoplasmic	168	211	0.51