YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29542638, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.94
Transmembrane Helix	19	38	0.94
Non-Cytoplasmic	39	48	0.75
Transmembrane Helix	49	68	0.95
Cytoplasmic	69	98	0.90
Transmembrane Helix	99	119	0.93
Non-Cytoplasmic	120	155	0.90
Transmembrane Helix	156	175	0.94
Cytoplasmic	176	184	0.87
Transmembrane Helix	185	204	0.93
Non-Cytoplasmic	205	226	0.87
Transmembrane Helix	227	251	0.86
Cytoplasmic	252	261	0.89
Transmembrane Helix	262	286	0.88
Non-Cytoplasmic	287	303	0.89
Transmembrane Helix	304	329	0.85
Cytoplasmic	330	350	0.87
Transmembrane Helix	351	372	0.90
Non-Cytoplasmic	373	391	0.93
Transmembrane Helix	392	413	0.89
Cytoplasmic	414	431	0.82
Transmembrane Helix	432	448	0.94
Non-Cytoplasmic	449	450	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRVETSVPV VRERWSSKLA FILAATGAAV GLGNIWRFPY MAGMYGGSAF LLIYLIFVLI  60
   61 IGLPIMIAEI LIGRRSRKNP VDALITLAQE SNHSRKWGLL GWLGALALLL ILSFYSVVAG 120
  121 WNVAYLIKSF SNEFYQLNPA QITNMWKSFL ANPWHLLGWH SIFMFLTMVV VAKGVKGGLE 180
  181 KATKFMMPAL YVILFILVIY AFSYGNFNKG FHFLFDFNHS KITTSVVIAA LGHAFFTLAL 240
  241 GAGAMAMYGA YVPRNVNLGK TVLIVASLDV LVAILSGLAI FPIVFAYHLP PNSGPGLMYV 300
  301 TLPIILAHLS SGWFIGGLCF LLLLFAAWTS SINLAEPLVV ILTERLGLKR TYAAIIIGLT 360
  361 AWFIGIGSVL SFNRWQSIKL HGLTIFDIST NLPTDIILPL GGLGFAIFAG WVMKKTITQK 420
  421 EVPSEIYSIW RFLVRYVAPL GILIVFISSI