YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29654845, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTHQEISSL LDWDDYNDPE AIKAAPEKKF SPKNEKSDEE ETGGGTTVQS GATGLEQLEM  60
   61 GAARIRVDDK KIINCHADLN QLVPFKYTWA WQKYLSGCAN HWMPNEINMT ADIALWKDPN 120
  121 GLTADERTIV KRSLGFFSTA DSLVANNLVL AIYRHITNPE CRQYLLRQAF EEALHTHAYQ 180
  181 YIIESLGLDE AEVFNMYREL PAVSKKAVWA LPYTQSLADP NFKTGTPEDD RRLLRDLIAF 240
  241 YVVFEGLFFY VGFTQILAMG RRGKMTGTSE QFQYILRDES MHVNFGIDVI NQIKIENPHL 300
  301 WNKNFQKEVI EMILEGVELE YQYAKDTMPR GILGLNANMF KDYLQYIANR RCAQIGLPEQ 360
  361 FPGAKNTFPW MSEMMDLKKE KNFFETRVIE YQAGGTLKWD E

Type	Start	End	Confidence
Non-Cytoplasmic	1	236	0.80
Transmembrane Helix	237	259	0.64
Cytoplasmic	260	401	0.51