YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29654728, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.89
Transmembrane Helix	6	25	0.91
Cytoplasmic	26	34	0.77
Transmembrane Helix	35	57	0.92
Non-Cytoplasmic	58	84	0.82
Transmembrane Helix	85	106	0.88
Cytoplasmic	107	116	0.81
Transmembrane Helix	117	135	0.93
Non-Cytoplasmic	136	141	0.77
Transmembrane Helix	142	160	0.96
Cytoplasmic	161	172	0.92
Transmembrane Helix	173	195	0.83
Non-Cytoplasmic	196	218	0.82
Transmembrane Helix	219	238	0.93
Cytoplasmic	239	258	0.85
Transmembrane Helix	259	279	0.92
Non-Cytoplasmic	280	287	0.79
Transmembrane Helix	288	310	0.92
Cytoplasmic	311	316	0.89
Transmembrane Helix	317	337	0.83
Non-Cytoplasmic	338	344	0.60
Transmembrane Helix	345	367	0.87
Cytoplasmic	368	381	0.89
Transmembrane Helix	382	404	0.88
Non-Cytoplasmic	405	423	0.88
Transmembrane Helix	424	446	0.89
Cytoplasmic	447	473	0.87
Transmembrane Helix	474	494	0.93
Non-Cytoplasmic	495	530	0.85
Transmembrane Helix	531	553	0.88
Cytoplasmic	554	630	0.75
Transmembrane Helix	631	652	0.94
Non-Cytoplasmic	653	653	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVRNLTLLT VLAPLLGCLI AGLGAKQIGR RGAQWVTIIL MTVSLLSAIA VFMLVVVRGE  60
   61 HFYGTIYTWG ISGRFHFDVG FMVDSLTAAM MVIVTFVSWV VHIYSIGYMA DDSGYQRFFS 120
  121 YMSMFTFAML MLVTANNFFQ LFFGWEGVGL VSYLLIGFWF DKESAAAGSL KAFLVNRAGD 180
  181 FGFILGIAAI LDYFGSLDYH TVFAGASALT QTTISVFPGA HWSIITVICI LLFIGAMGKS 240
  241 AQMPLHVWLP ESMEGPTPIS ALIHAATMVT AGVFLVARMS PLFELSQVAL STVLVIGATT 300
  301 ALLTGLLAFV EFDIKRVIAF STMSQLGYMI AADGASAYSA GIFHLLTHAC FKALLFLSAG 360
  361 SVILALHHEQ DMRKMGGLRK YLPATYITFL IGALSLAAIP PFAGFYSKDT IIEAVAHSTI 420
  421 PGARYAYACL LIGAFVTGYY IFRAFFMTFH TTERMSPKLK STLKETPLNM RGPQWILSVP 480
  481 SVLLGAALIY WIIYRRPSLL GSSVMVLPQH NVLSTMAGGF HNVFYMTYHS LIALPFWASV 540
  541 LGIFFAWLTV IAAPKIPALL ERRLPWLHRI LVAKYGFDAF NWIVFVRGGR ALANLFFRVG 600
  601 DLKVLDHFIV DGSGRNATRV ARFMRRLQSG YLYHYVFVMI LGLLAFLIWL VLA