YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29654574, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKNVFYAQ SGGATAVINA TACGVIQTAA QYPTKIGKVL AGRNGIIGAL KEELIDTSLE  60
   61 SLENIAALRH TPSSAFGSCR YKLNNIHHDR RQYERLIEVF KAHDIGYVFY NGGGDSQDTT 120
  121 HKISQLSQLM DYPLVCIGLP KTIDNDLPFT DNCPGFGSVA KYIAVSTQEA ALDVRGMCAT 180
  181 STKIFILEVM GRHAGWIAAS SALGKSQPDD APHLILFPEV PFQTEQFLTK VSRSVEKNGY 240
  241 CVIVASEGIR HPDGRFVAES GLHDAFGHEQ LGGVAPILAR LIKKRLNFKY HWAVADYLQR 300
  301 AARHIASQTD LDQAYALGKT AVEFALAGKS DVMLTIQREM GSDYKWRIGT APLCEVANVE 360
  361 HKMPSHYISE DGFGITEACY TYLKPLIEGE SYPPYKNGVP DYVTLKNQLV AKKLKEAFAV 420
  421

Type	Start	End	Confidence
Signal Peptide	1	22	0.56
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	420	0.99