YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29541730, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.85
Transmembrane Helix	16	37	0.88
Non-Cytoplasmic	38	74	0.83
Transmembrane Helix	75	93	0.93
Cytoplasmic	94	109	0.92
Transmembrane Helix	110	131	0.89
Non-Cytoplasmic	132	143	0.78
Transmembrane Helix	144	165	0.92
Cytoplasmic	166	203	0.97
Transmembrane Helix	204	223	0.94
Non-Cytoplasmic	224	229	0.83
Transmembrane Helix	230	252	0.89
Cytoplasmic	253	268	0.90
Transmembrane Helix	269	290	0.90
Non-Cytoplasmic	291	298	0.79
Transmembrane Helix	299	319	0.95
Cytoplasmic	320	370	0.88
Transmembrane Helix	371	401	0.69
Non-Cytoplasmic	402	455	0.49

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPEVQHNAS YRLLRYSLFP LFLITVCPPA AIIMWYTNVA LNGSLTALAV LFTQKGFFTT  60
   61 LYQIWSPVFF GTREAWFIIS IFMITQLLLM RIVPGKRFEG PITPKGNVPV YKANGVLCFG 120
  121 ITLTLFYLCA YQFRWFPPTI VYDHFGGILG ALNIFSLIFC FILYFKGRFA PSTSDHSLSG 180
  181 NFIFDYYWGT ELYPRILGWD IKMFTNCRFG MMGWPIIILS FAAKQNQLYG LSNSMLVALL 240
  241 IQLVYIGKFF WWERGYLRSL DIMHDRAGFY ICWGCLVWVP SIYTSPLLYL VNHPIPLSWF 300
  301 SADIILFLGV GCVFINYFAD AQRQKVRASN GNCKIWGKKP ALIRATYTTE QGKQKQTVLL 360
  361 ASGWWGISRH FHYLPEIGAA FFWTVPALFS HFLPYFYVVY LTILLTHRSL RDENRCHKKY 420
  421 GPDWEIYCQQ VPSRIIPYFL TKRFNAMVKW RKSAN