YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29541109, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.82
Transmembrane Helix	32	51	0.84
Non-Cytoplasmic	52	55	0.77
Transmembrane Helix	56	78	0.86
Cytoplasmic	79	85	0.71
Transmembrane Helix	86	105	0.91
Non-Cytoplasmic	106	109	0.68
Transmembrane Helix	110	129	0.79
Cytoplasmic	130	146	0.81
Transmembrane Helix	147	168	0.93
Non-Cytoplasmic	169	174	0.84
Transmembrane Helix	175	196	0.95
Cytoplasmic	197	220	0.93
Transmembrane Helix	221	240	0.93
Non-Cytoplasmic	241	245	0.80
Transmembrane Helix	246	266	0.91
Cytoplasmic	267	275	0.88
Transmembrane Helix	276	298	0.91
Non-Cytoplasmic	299	320	0.86
Transmembrane Helix	321	341	0.91
Cytoplasmic	342	356	0.85
Transmembrane Helix	357	377	0.94
Non-Cytoplasmic	378	383	0.86
Transmembrane Helix	384	408	0.84
Cytoplasmic	409	418	0.79
Transmembrane Helix	419	440	0.87
Non-Cytoplasmic	441	463	0.89
Transmembrane Helix	464	486	0.87
Cytoplasmic	487	492	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNYIPLVTQ GLLMKQPRAL TPLFLTEMWE RFGFYVTQSL LILYITSVLN FSDSRAYMIL  60
   61 GEFTALVYIA PLAGGFFADR VLGPRYAIFL GAIFLGLGYF FLGFAGQKLL FLSLSILVVG 120
  121 NGLLKPNISS FLGQFYYEND PRRDAGFTLF YIGINLGGLL ALGSAGFIQE KLGWGAAFLS 180
  181 AGVGMLIATV TFCFGFKKYE NRGLPIPPDQ IRPSFLRMTR HKLSIIFLIL LTILIAYLLL 240
  241 SSTGIANLLQ LVLGISILVT LLFVSSRFEK RIRNKFLVLI ILILASIVFW GILFQAFASV 300
  301 NLFTQRVVDR HIVGLLIPSP AFISLETIFI ILLGPFLAAL WQRLHIKKLD PTPGAKFSFA 360
  361 MFSAAIAMTL LVLAVHWTET SGLIHPIWVV LFYLFLTLGE MLLSPIGLSM VTELSPPHLT 420
  421 GLMMGIWFMA LGFGGQLSGF LAEQAGVPKY IVDIHAANEI YGHAFMNNAI LSFVIGLILL 480
  481 ILSPWLKRLM KN