YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29540879, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.87
Transmembrane Helix	19	37	0.93
Non-Cytoplasmic	38	55	0.83
Transmembrane Helix	56	78	0.87
Cytoplasmic	79	85	0.88
Transmembrane Helix	86	106	0.92
Non-Cytoplasmic	107	113	0.66
Transmembrane Helix	114	136	0.88
Cytoplasmic	137	147	0.85
Transmembrane Helix	148	171	0.86
Non-Cytoplasmic	172	176	0.78
Transmembrane Helix	177	198	0.91
Cytoplasmic	199	217	0.94
Transmembrane Helix	218	237	0.86
Non-Cytoplasmic	238	260	0.70
Transmembrane Helix	261	280	0.88
Cytoplasmic	281	291	0.78
Transmembrane Helix	292	312	0.94
Non-Cytoplasmic	313	318	0.68
Transmembrane Helix	319	341	0.90
Cytoplasmic	342	349	0.89
Transmembrane Helix	350	371	0.89
Non-Cytoplasmic	372	378	0.73
Transmembrane Helix	379	398	0.95
Cytoplasmic	399	408	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFSFPFSGK SKQFTTQPAL FSAIVILFFI WGFITLLNDL LIPLLRERLH LSYGQAMLVQ  60
   61 FSFFFTYFLM SLPMAFLLNK LKYQKGIIVG LFIIALGCLI FIPADLTLIY RVFLFGLFIL 120
  121 ASGIVMLQVS ANPLITLLGP TKTSSARLTL AQGINSLGYV IAPLIVGRFI VATNLYVPYI 180
  181 IIALVLMAVA LFISQFNFHR VDDPLDKEEK DEIIDFALWK HLPFTLGLVG IFFYVGAEVS 240
  241 AGSLIVNYLH LPQIANFSLS HAAAYLSIYW GGAMIGRLIG SYVLTKINAS KVLAVCAVAN 300
  301 LLLLCGVILM TGGAAMWSLL LLGVFNSIMF PTLFALAIAG LPNESIKNKA SGFLIMAIVG 360
  361 GAIIPELQGL LADYIGLQHS FILLLVSYVI ITAYGVYINQ TISHSHFF