YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29540811, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.93
Transmembrane Helix	18	39	0.88
Non-Cytoplasmic	40	44	0.66
Transmembrane Helix	45	65	0.92
Cytoplasmic	66	85	0.89
Transmembrane Helix	86	105	0.95
Non-Cytoplasmic	106	113	0.74
Transmembrane Helix	114	132	0.92
Cytoplasmic	133	146	0.80
Transmembrane Helix	147	171	0.87
Non-Cytoplasmic	172	177	0.74
Transmembrane Helix	178	197	0.88
Cytoplasmic	198	226	0.92
Transmembrane Helix	227	247	0.90
Non-Cytoplasmic	248	264	0.82
Transmembrane Helix	265	286	0.90
Cytoplasmic	287	294	0.77
Transmembrane Helix	295	316	0.91
Non-Cytoplasmic	317	325	0.82
Transmembrane Helix	326	347	0.94
Cytoplasmic	348	356	0.84
Transmembrane Helix	357	377	0.95
Non-Cytoplasmic	378	383	0.80
Transmembrane Helix	384	405	0.91
Cytoplasmic	406	433	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHENQESSA RLLFNRRVMT VLFLSFSSTL PLVLLTGTLQ AWYTAAGVSL MVIGSLSLLQ  60
   61 YAYLVKFVWA PFMDRYAPLG LGRRRSWILL TQISLAGALA VMAFMNPAYH PWELFWLSAV 120
  121 VAFISASQDV VIDGYRVDVL RQKERGFGVA VTTVGGRMAM LVGGGLALIL AADYGWRATY 180
  181 LTMALLMLIQ IIPTLTAPNP EKPVYPPVTL HAAVVAPFRE LLTRKHIVMI LLLVLIYKFG 240
  241 DALALALNTT FLMRGVGFTL LELGYSYKLT SVIASLLGGF AGGFFMPRLG LYRSLMVFGF 300
  301 LQTVTNLSFM VLALVGKNFP VMIGSIFSDY FCGGLSTAAF VAFLIALCKR EYSATQYAIL 360
  361 SALMAVSRVV IGPVAAYLVK HMGWAPFYLI TFFAGFPALL ILRWLRDRID FSADTLHLKG 420
  421 NPSQKPSPRR VAI