YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ANTR2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	131	0.96
Transmembrane Helix	132	150	0.92
Non-Cytoplasmic	151	167	0.77
Transmembrane Helix	168	188	0.86
Cytoplasmic	189	198	0.68
Transmembrane Helix	199	219	0.90
Non-Cytoplasmic	220	225	0.69
Transmembrane Helix	226	248	0.84
Cytoplasmic	249	260	0.90
Transmembrane Helix	261	283	0.90
Non-Cytoplasmic	284	289	0.74
Transmembrane Helix	290	307	0.94
Cytoplasmic	308	351	0.93
Transmembrane Helix	352	373	0.90
Non-Cytoplasmic	374	391	0.81
Transmembrane Helix	392	410	0.91
Cytoplasmic	411	425	0.74
Transmembrane Helix	426	445	0.69
Non-Cytoplasmic	446	480	0.61
Transmembrane Helix	481	507	0.82
Cytoplasmic	508	514	0.61
Transmembrane Helix	515	534	0.90
Non-Cytoplasmic	535	541	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALGGLISNR NFGSFIGSGN GCQRLGKSGA EVSKLFPNAL LCRNHQPLQA SLHHESGHMR  60
   61 RSFGCFLQPR MDSVIRFRNS IKINRSRAYY KSEESDITEG VVPSADGSAE AILVEGNLQN 120
  121 ASPWWQQFPR RWVIVLLCFS SFLLCNMDRV NMSIAILPMS QEYNWSSATV GLIQSSFFWG 180
  181 YLLTQILGGI WADKFGGKVV LGFGVVWWSF ATIMTPIAAR LGLPFLLVVR AFMGIGEGVA 240
  241 MPAMNNMLSK WIPVSERSRS LALVYSGMYL GSVTGLAFSP MLITKFGWPS VFYSFGSLGS 300
  301 IWFLLWLKFA YSSPKDDPDL SEEEKKVILG GSKPREPVTV IPWKLILSKP PVWALIISHF 360
  361 CHNWGTFILL TWMPTYYNQV LKFNLTESGL LCVLPWLTMA VFANIGGWIA DTLVSRGLSI 420
  421 TNVRKIMQSI GFLGPAFFLS QLSHVKTPAM AVLCMACSQG SDAFSQSGLY SNHQDIGPRY 480
  481 AGVLLGLSNT AGVLAGVFGT AATGYILQRG SWDDVFKVAV ALYLIGTLVW NLFATGEKIL 540
  541 D