YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57867074, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNINKLYWKA LYYWIRYLNY NVIYRDKEDD EIWLSHKRKH SIVVFRKDVT STQEIRFDKS  60
   61 KIMERPEEIQ QFIGYIPESY EFYYFTDKEL SKENLNEEKP IKLKFKIISN EQSLNSLPIN 120
  121 FLLLKMLINN EDKRTYLHYK RKVLTQNLVD KHMQRFTPIT YTLILINIVI WLCMILYLNR 180
  181 FSDVKLLEVG GLVHFNVVHG EWYRLISSMF LHFNFEHILM NMLSLFIFGK IVESIIGSWR 240
  241 MLIIYIISGL YGNFVSLSFN TTTISVGASG AIFGLIGSIF VIMYLSKNFN KKMIGQLLIA 300
  301 LVVLIVFSLF MSNINIMAHL GGFISGVLIT LIGYYFKTQR SLFWSFLIVF LLIFIILQIR 360
  361 IFTISEDNIY DKLIRDEMIK GNYSEAKNVV KQTLNNNYAD DETYYLSGLI TATKSSQAEA 420
  421 VSEWERGLRK FPNSGVLNYE LAIANRSLSD DKKALKYIKK AVAINPNNKK YVNLKKELSK 480
  481 SNDTKN

Type	Start	End	Confidence
Cytoplasmic	1	158	0.96
Transmembrane Helix	159	178	0.94
Non-Cytoplasmic	179	208	0.80
Transmembrane Helix	209	229	0.81
Cytoplasmic	230	235	0.77
Transmembrane Helix	236	257	0.83
Non-Cytoplasmic	258	263	0.73
Transmembrane Helix	264	285	0.93
Cytoplasmic	286	292	0.90
Transmembrane Helix	293	311	0.93
Non-Cytoplasmic	312	315	0.77
Transmembrane Helix	316	336	0.86
Cytoplasmic	337	341	0.83
Transmembrane Helix	342	362	0.92
Non-Cytoplasmic	363	486	0.90