YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24350997, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.94
Transmembrane Helix	7	27	0.92
Non-Cytoplasmic	28	32	0.79
Transmembrane Helix	33	53	0.90
Cytoplasmic	54	62	0.88
Transmembrane Helix	63	85	0.92
Non-Cytoplasmic	86	91	0.83
Transmembrane Helix	92	113	0.94
Cytoplasmic	114	121	0.80
Transmembrane Helix	122	144	0.89
Non-Cytoplasmic	145	156	0.76
Transmembrane Helix	157	177	0.93
Cytoplasmic	178	186	0.88
Transmembrane Helix	187	208	0.92
Non-Cytoplasmic	209	216	0.75
Transmembrane Helix	217	242	0.80
Cytoplasmic	243	260	0.72
Transmembrane Helix	261	288	0.70
Non-Cytoplasmic	289	308	0.51

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNVNRLFPL FALLGAVTAY LMPAWFVVFK NSIVPLLVVI MLSMGLTLDL QDFANAFKQK  60
   61 RAVITGLILQ FTLMPLSALA ISLLLGLDRE LTIGMVLVGS VAGGTASNVI CYLAKGDVAL 120
  121 SITMTALSTL AGVVLTPLII QLLIGEMVAI PLMDMLLSLV KIVLIPVTVG VVLNHFFKPQ 180
  181 VAKLSPALPL ISIVAIVMAI SIIVALNAGQ FAQVGPVILL AVFLHNGLGL TLGYLCCRLL 240
  241 GFSHTVCKTI SIEVGLQNSG LATALCIKFF SPISAIPSAI FSIWHNLSGA MLAGYWASRV 300
  301 QKQTEALE