YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24350774, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.86
Transmembrane Helix	16	35	0.94
Non-Cytoplasmic	36	42	0.78
Transmembrane Helix	43	65	0.88
Cytoplasmic	66	96	0.92
Transmembrane Helix	97	125	0.74
Non-Cytoplasmic	126	147	0.81
Transmembrane Helix	148	167	0.92
Cytoplasmic	168	177	0.90
Transmembrane Helix	178	199	0.88
Non-Cytoplasmic	200	223	0.87
Transmembrane Helix	224	245	0.90
Cytoplasmic	246	255	0.86
Transmembrane Helix	256	279	0.90
Non-Cytoplasmic	280	317	0.94
Transmembrane Helix	318	339	0.93
Cytoplasmic	340	357	0.91
Transmembrane Helix	358	380	0.90
Non-Cytoplasmic	381	388	0.71
Transmembrane Helix	389	408	0.92
Cytoplasmic	409	435	0.92
Transmembrane Helix	436	453	0.52
Non-Cytoplasmic	454	454	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSANTNSTN HFSSRLGFIM AAAGSAVGVG NIWGFPTQAA THGGGAFLLV YLVLIFILGI  60
   61 PMLMAELMIG RHGQTNPADA MGKLGCNSLT RSLGKTIGLI SIVTAGLIYT FYSILSGWFV 120
  121 SFAIAPIATA FGSNDTAAWL MDFSLSRNLV FTLIFSTLVF LVLLQGVQEG IEKWSKRLMP 180
  181 LLLIMLIAGV AYIFSLNGAS EGISALLTPN FAKAIAPDTL INALGQTFFS LTIGTGAMMV 240
  241 YGSYLSQKEN IAKLTVWVAF TDSGIAFLAA FLIIPAMYVA QHNGVQIFSP EGKLIDSDAL 300
  301 VFTVLPALFS TLGDTANLII SVVFFMLLII AGLTSAISIA EVPTSYVMQK CGFSRQRATL 360
  361 IIGLLLTALS LLLAVFFETL FSFTIMLTTQ MTQPLVALGI AIYLGWIWRQ SQLLKAISKQ 420
  421 EGVDATGLFW RIWPRYVKYV CPVLIIAIAI RQFV