YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24350725, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.40
Transmembrane Helix	5	19	0.57
Cytoplasmic	20	28	0.48
Transmembrane Helix	29	51	0.85
Non-Cytoplasmic	52	86	0.52
Transmembrane Helix	87	121	0.71
Cytoplasmic	122	164	0.55
Transmembrane Helix	165	187	0.87
Non-Cytoplasmic	188	191	0.44
Transmembrane Helix	192	215	0.74
Cytoplasmic	216	244	0.54
Transmembrane Helix	245	269	0.88
Non-Cytoplasmic	270	283	0.40
Transmembrane Helix	284	307	0.80
Cytoplasmic	308	314	0.34
Transmembrane Helix	315	329	0.33
Non-Cytoplasmic	330	341	0.62
Transmembrane Helix	342	364	0.91
Cytoplasmic	365	377	0.64
Transmembrane Helix	378	399	0.86
Non-Cytoplasmic	400	401	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQSILGIFV LLGVGLLFSD NRSLISWRAV IGAFGIIIAL AFFVLATEIG ADVLLAVSNT  60
   61 VGKVFGYGTE GIKFAFGSLV NFSVEGIGFV WALQVLPQII FTAALTSLLY YLGIMQWFVL 120
  121 IIGGSLQKVL GTSRAESMNA AGNIILGQTE APLLIKPYHR VLTRAQIFAV MVGGLSSIAG 180
  181 SILAGLAGMG VALNYLIMAC FMSAPAGLMF AKLLIPETEP TVNEVPELPD DEKPSSFIDA 240
  241 IAKGAIAGMG IAAIVGAVII ACIGLMALLN GGLGAIGELF GMPTLTVDMI LGTLFAPVAW 300
  301 LIGIPWVEAS TAGAFLGQKI AMNEFVAFAN MGNVELSARS NAIMTIALCG FANIGSVAMV 360
  361 CGALSKMIPQ RAGLIGQLGM KVLLAATLAN LMNAAIVSLF I