YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24350538, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIESLRLLAQ HKSFTELLLS STLINVLSLA LPFTMLQIYD RILPNEAYGT ASVLAIGVGI  60
   61 AILLELVLRY TRSWLLALNA SNYELQTTAQ FVDRLMKADY HHVEQLGSGK ILHGITSIAT 120
  121 MREIYSGQAA VALMDFPFVI IFLALVAYIG GPLVFIPILV WGIAGIGVWQ IGKKLSVATR 180
  181 ELAISDDERT RLLILVLSGL TTAKSLALES RITYAYKKIN YQRLAQQNEV DWLSSQLQEW 240
  241 IQGASQATTL ALVLIGCFEV LNGDLTTGGL AACSILAGRA VAPLSAIGSL KAKFVTAQSA 300
  301 MQDVNEIIAS PPESLNGTQV YQQKLPSGPI QFEQVSAQQT GAKLKQINLT IPAGSLVTVT 360
  361 SNPLTHASLL LSTVGGYHQV TEGAIKIDSI PLTEHDPLEY RQSISYVSPW ATLLAGSILD 420
  421 NLTLFRHERE AYAMVLADKL GLSATIAQLP AGYQTLVGNN DSQMLNKGAI KLIAIVRALA 480
  481 QSPSILLLDE PMVSLDADSQ QRLLALLLEL KNHITLIVAS YFTEIAAISD YRIHISSQGD 540
  541 ATMSSNGEL

Type	Start	End	Confidence
Cytoplasmic	1	16	0.91
Transmembrane Helix	17	38	0.89
Non-Cytoplasmic	39	46	0.89
Transmembrane Helix	47	68	0.93
Cytoplasmic	69	124	0.97
Transmembrane Helix	125	147	0.83
Non-Cytoplasmic	148	152	0.63
Transmembrane Helix	153	172	0.88
Cytoplasmic	173	549	0.50