YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24375595, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVYQYRGRS GQGQAVTGQL DAASESAAAD MLLSRGIIPL EVKAAKVAKS FSLTQLFGSK  60
   61 VGLDELQIFT RQMYSLTRSG IPILRAIAGL SETAHSQRMK DALNDISEQL TAGRPLSSAM 120
  121 NQHPDVFDSL FVSMVHVGEN TGKLEDAFIQ LSGYIEREQE TRRRIKAAMR YPIFVLIAIG 180
  181 LAMVILNIMV IPKFAEMFSR FGADLPWATK VLIGTSNLFV NYWPLMLVML LGAIIGIRYW 240
  241 HHTEKGEKQW DKWKLHIPAV GSIIERSTLA RYCRSFSMML SAGVPMTQAL SLVADAVDNA 300
  301 YMHDKIVGMR RGIESGESML RVSNQSKLFT PLVLQMVAVG EETGQIDQLL NDAADFYEGE 360
  361 VDYDLKNLTA KLEPILIGIV AVIVLILALG IYLPMWDMLN VVKGGK

Type	Start	End	Confidence
Cytoplasmic	1	170	0.99
Transmembrane Helix	171	191	0.95
Non-Cytoplasmic	192	221	0.89
Transmembrane Helix	222	240	0.95
Cytoplasmic	241	374	0.82
Transmembrane Helix	375	396	0.92
Non-Cytoplasmic	397	406	0.76