YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24375491, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKSLSTRIF IGLFTGLILG TLVQYFLNDI GFFSGNLVEL ASGVGTMFVN MIMMLVVPLV  60
   61 FVSIVCGVCE LQDLKSFGRL GGKTFGFYIV NTVVAISTAL LVVLLLDPGK GVDMSSADGV 120
  121 AITATELPSL IALLIDIVPR NPVAAFMSGN MLQVIFMALM LGGVMKSLGE HVAGAVQGFQ 180
  181 TANKIMMKLI SVVMSLAPFG VFALMFKLGA TLDAAVFMSV LEYLVIILAL LLLWIFVVYP 240
  241 LSVGMFTPIS AKTFRAKTQE QVLFSLSTAS SNATIPVTMR TLTEKLGVNR AVAGFGVPLG 300
  301 ATMNMGGVAI YITIAIFFVA NAFGMPITSE QLPSLLFSIF LLSVGAGGVP GGGMVMIGVL 360
  361 IHQMGLPIEA FAIVAALDRI IDMVLTSCNV VGDTAVLTIV DQTEKAVK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.88
Transmembrane Helix	9	27	0.97
Non-Cytoplasmic	28	46	0.87
Transmembrane Helix	47	69	0.90
Cytoplasmic	70	84	0.89
Transmembrane Helix	85	106	0.94
Non-Cytoplasmic	107	142	0.68
Transmembrane Helix	143	169	0.76
Cytoplasmic	170	184	0.56
Transmembrane Helix	185	208	0.86
Non-Cytoplasmic	209	219	0.49
Transmembrane Helix	220	246	0.78
Cytoplasmic	247	294	0.45
Transmembrane Helix	295	325	0.71
Non-Cytoplasmic	326	334	0.38
Transmembrane Helix	335	361	0.85
Cytoplasmic	362	408	0.49