YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24350301, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVQVSDSLQ VEHRLDQLSQ ALNSGMFVHV RQMLQNMASS DIALILESSP PKARQVLWQL  60
   61 IDQDQLGDIL DELSEELKDP LIRAMSPERV AKATASMDTD DLAYILRSLP DTVYKQVLQS 120
  121 MSLQNRQRVE QALSYPDETA GSLMNTDTVT LRPDVNIDVV LRYLRQRGNL PDTTDTLYVV 180
  181 DKQDKVLGGV KLADLLTCDP NTPISSIIDT DIESIPVGMS DSEVAQLFER HDWVSAPVVD 240
  241 SEGKLLGRIT IDDVVDVIRE DAEHSMMGMA GMDDDEDTFA PVVKSTLRRS LWLTINLFAA 300
  301 LLAASVSNMF EGTIEQFATI AILMTIVPSM GGVAGNQTLA LVIRGIALGH IGQSNARWLI 360
  361 GKELAIGFLN GLMWSILVFI AVLVWKDDIA LASLIGGAML INMTVAGLAG ASIPLILKRL 420
  421 KVDPALAGGM VLTTVTDVIG LFAFLGLATL YLMH

Type	Start	End	Confidence
Cytoplasmic	1	290	0.97
Transmembrane Helix	291	310	0.92
Non-Cytoplasmic	311	319	0.72
Transmembrane Helix	320	343	0.87
Cytoplasmic	344	363	0.83
Transmembrane Helix	364	385	0.92
Non-Cytoplasmic	386	391	0.81
Transmembrane Helix	392	416	0.88
Cytoplasmic	417	425	0.87
Transmembrane Helix	426	450	0.87
Non-Cytoplasmic	451	454	0.78