YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24349988, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	3	0.61
Transmembrane Helix	4	21	0.65
Cytoplasmic	22	30	0.70
Transmembrane Helix	31	52	0.84
Non-Cytoplasmic	53	95	0.52
Transmembrane Helix	96	120	0.83
Cytoplasmic	121	172	0.64
Transmembrane Helix	173	193	0.96
Non-Cytoplasmic	194	200	0.73
Transmembrane Helix	201	221	0.92
Cytoplasmic	222	253	0.82
Transmembrane Helix	254	279	0.80
Non-Cytoplasmic	280	290	0.61
Transmembrane Helix	291	312	0.79
Cytoplasmic	313	330	0.53
Transmembrane Helix	331	348	0.67
Non-Cytoplasmic	349	360	0.73
Transmembrane Helix	361	386	0.89
Cytoplasmic	387	395	0.83
Transmembrane Helix	396	419	0.89
Non-Cytoplasmic	420	422	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQILVSLLGI ITLLAVAYLA SENRRAINYR TVGLAFLLQL ALGAFVMYSA LGQSMIFSMA  60
   61 AAVSNVISYS NDGMSFMFGG LVSDKMYELF GAGGFVIAFK VLPIIVFFSA LSAVLYYLGI 120
  121 MQLVVKAVGG ALQKLLNTSK AESMSASANI FLGVTEAPLL IKPYMPRMTR SELFAVMCGG 180
  181 LASIAGTMLA GYAQLGIKME YLLAASFMAA PGGLLFAKLL IPQTETINDA HLQLTEENQP 240
  241 RNLLDAATTG TMSGLSLALA VGAMLFSFIS LVALFNGMLG GIGAWFGLEG LTLQQILGYL 300
  301 FAPLAWLMGI SWNEAMLAGS FIGQKIVINE FFAYINLAPY LSGDALVATT GQPMSERTQV 360
  361 ILSFALCGFA NIGTVAIAIA GIGGLVPERR AEIASLGLKA LAAGILSNLM AATIAGLFMS 420
  421 LS