YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24375100, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFTNGRLRH KRVLPGFSIS LGVSLLFVSL ILLLPTTGLI MQTSQMSWSE YWGVIADPRV  60
   61 LASYKVTILS ALAASIFNCL FGLLLAWVLV RYEFPGKRIL DALVDLPFAL PTAVAGITLA 120
  121 TLYAENGQIG SLLAELGIKV AYTPLGIVVA MIFTSIPFVV RTVQPVLEEL SHEEEEAGMT 180
  181 LGATDAAVFW RVILPSLWPA LMVGTALSFT RSLGEFGAVI FIAGNMPYIS EITSLMIFVR 240
  241 LQEFDFAGAS AIASIVLMTS LLLLLLINLW QARYLRRIHG R

Type	Start	End	Confidence
Cytoplasmic	1	16	0.90
Transmembrane Helix	17	39	0.90
Non-Cytoplasmic	40	67	0.87
Transmembrane Helix	68	90	0.92
Cytoplasmic	91	101	0.89
Transmembrane Helix	102	124	0.73
Non-Cytoplasmic	125	139	0.72
Transmembrane Helix	140	160	0.83
Cytoplasmic	161	187	0.64
Transmembrane Helix	188	222	0.61
Non-Cytoplasmic	223	245	0.58
Transmembrane Helix	246	270	0.88
Cytoplasmic	271	281	0.85